Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: KN540470.1_FGT007

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Location

Scaffold KN540470.1: 32,368-34,904 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 19 domains and features and maps to 28 oligo probes.

Gene

This transcript is a product of gene KN540470.1_FG007 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	Flags
-	KN540470.1_FGT007	891	296aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	43	295	-	PTHR23333	-
Gene3D	168	295	-	3.10.20.90	-
CDD	225	294	-	cd01770	-
Superfamily	95	189	NSFL1 cofactor p47, SEP domain superfamily	SSF102848	IPR036241 [Display all genes with this domain]
Gene3D	103	165	NSFL1 cofactor p47, SEP domain superfamily	3.30.420.210	IPR036241 [Display all genes with this domain]
SMART	100	193	SEP domain	SM00553	IPR012989 [Display all genes with this domain]
PROSITE profiles	103	167	SEP domain	PS51399	IPR012989 [Display all genes with this domain]
Pfam	108	179	SEP domain	PF08059	IPR012989 [Display all genes with this domain]
SMART	218	296	UBX domain	SM00166	IPR001012 [Display all genes with this domain]
PROSITE profiles	219	295	UBX domain	PS50033	IPR001012 [Display all genes with this domain]
Pfam	223	294	UBX domain	PF00789	IPR001012 [Display all genes with this domain]
Superfamily	176	294	Ubiquitin-like domain superfamily	SSF54236	IPR029071 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	178	208
MobiDBLite	191	208
Phobius	1	28
Phobius	29	45
Phobius	46	296
Seg	191	210
TMHMM	23	45

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