Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: KN539421.1_FGT007

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Location

Scaffold KN539421.1: 73,331-77,610 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 26 domains and features and maps to 22 oligo probes.

Gene

This transcript is a product of gene KN539421.1_FG007 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	Flags
-	KN539421.1_FGT007	1734	577aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	301	335	-	PS50294	-
SMART	379	459	BING4, C-terminal domain	SM01033	IPR012952 [Display all genes with this domain]
Pfam	380	458	BING4, C-terminal domain	PF08149	IPR012952 [Display all genes with this domain]
PANTHER	30	553	WD repeat-containing protein WDR46/Utp7	PTHR14085	IPR040315 [Display all genes with this domain]
SMART	172	209	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	294	333	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	296	333	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	301	342	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
PROSITE patterns	320	334	WD40 repeat, conserved site	PS00678	IPR019775 [Display all genes with this domain]
Superfamily	144	407	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	143	412	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	497	510
MobiDBLite	497	543
MobiDBLite	511	543
Phobius	1	7
Phobius	1	28
Phobius	8	21
Phobius	22	28
Phobius	29	577
Seg	15	21
Seg	468	491
Seg	496	515
SignalP	1	28
SignalP GRAM NEGATIVE	1	28
TMHMM	5	27
Ncoils	469	496

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Personal Data