Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: KN539127.1_FGT001

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Description

Protein TRANSPARENT TESTA GLABRA 1 [Source:Projected from Arabidopsis thaliana (AT5G24520) UniProtKB/Swiss-Prot;Acc:Q9XGN1]

Location

Scaffold KN539127.1: 75,540-76,607 reverse strand.

About this transcript

This transcript has 1 exon, is annotated with 14 domains and features and maps to 21 oligo probes.

Gene

This transcript is a product of gene KN539127.1_FG001 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	Flags
-	KN539127.1_FGT001	1068	355aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	13	355	WD repeat-containing protein DCAF7-like	PTHR19919	IPR045159 [Display all genes with this domain]
SMART	71	111	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	132	172	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	175	213	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	180	213	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	182	222	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	264	304	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	266	303	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	271	305	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
PROSITE patterns	291	305	WD40 repeat, conserved site	PS00678	IPR019775 [Display all genes with this domain]
Superfamily	27	306	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	77	355	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
Seg	3	21
Seg	93	129

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