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    Transcript: KN539089.1_FGT007

    Description

    Histone deacetylase [Source:Projected from Arabidopsis thaliana (AT3G18520) UniProtKB/TrEMBL;Acc:F4J8S1]

    Location

    Scaffold KN539089.1: 135,768-149,768 reverse strand.

    About this transcript

    This transcript has 29 exons, is annotated with 42 domains and features and maps to 99 oligo probes.

    Gene

    This transcript is a product of gene KN539089.1_FG007 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeFlags
    -KN539089.1_FGT0073000999aa
     
    Protein coding
    		Ensembl Canonical

    Domains & features

    Domains

    Show/hide columns
    • Domain source
    • Start
    • End
    • Description
    • Accession
    • InterPro
    Download what you seeDownload whole table
    Domain sourceStartEndDescriptionAccessionInterPro
    Gene3D30253-1.20.58.70-
    CDD221282-cd15848-
    CDD601891-cd09992-
    PANTHER577930Histone deacetylase and polyamine deacetylasePTHR10625IPR050284 [Display all genes with this domain]
    Pfam601890Histone deacetylase domainPF00850IPR023801 [Display all genes with this domain]
    Gene3D558949Histone deacetylase domain superfamily3.40.800.20IPR037138 [Display all genes with this domain]
    Prints703726Histone deacetylase familyPR01270IPR000286 [Display all genes with this domain]
    Prints736751Histone deacetylase familyPR01270IPR000286 [Display all genes with this domain]
    Prints824834Histone deacetylase familyPR01270IPR000286 [Display all genes with this domain]
    Superfamily34277SNARESSF47661IPR010989 [Display all genes with this domain]
    SMART29173Syntaxin, N-terminal domainSM00503IPR006011 [Display all genes with this domain]
    Pfam32129Syntaxin, N-terminal domainPF00804IPR006011 [Display all genes with this domain]
    CDD34209Syntaxin, N-terminal domaincd00179IPR006011 [Display all genes with this domain]
    Pfam137210Syntaxin, N-terminal domainPF00804IPR006011 [Display all genes with this domain]
    PROSITE patterns228267Syntaxin/epimorphin, conserved sitePS00914IPR006012 [Display all genes with this domain]
    SMART217284Target SNARE coiled-coil homology domainSM00397IPR000727 [Display all genes with this domain]
    PROSITE profiles222284Target SNARE coiled-coil homology domainPS50192IPR000727 [Display all genes with this domain]
    Pfam258310Target SNARE coiled-coil homology domainPF05739IPR000727 [Display all genes with this domain]
    Superfamily577921Ureohydrolase domain superfamilySSF52768IPR023696 [Display all genes with this domain]
    PROSITE patterns526545Zinc finger, RanBP2-typePS01358IPR001876 [Display all genes with this domain]

    Other features

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    • Feature type
    • Start
    • End
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    Feature typeStartEnd
    MobiDBLite128
    MobiDBLite107133
    MobiDBLite395404
    MobiDBLite395426
    MobiDBLite491511
    Phobius1293
    Phobius294314
    Phobius315356
    Phobius357378
    Phobius379999
    Seg298314
    Seg322336
    Seg499514
    Seg561575
    Seg607618
    Seg672686
    Seg722734
    TMHMM294313
    TMHMM353372
    Ncoils4168
    Ncoils151171
    Ncoils225245

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