Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: KN539075.1_FGT002

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Description

Armadillo-like helical domain containing protein [Source: Projected from Oryza sativa (Os12g0570000)]

Location

Scaffold KN539075.1: 133,759-139,187 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 25 domains and features and maps to 28 oligo probes.

Gene

This transcript is a product of gene KN539075.1_FG002 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	Flags
-	KN539075.1_FGT002	1830	609aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	30	561	-	PTHR23315	-
Superfamily	176	263	-	SSF57850	-
Pfam	313	352	Armadillo	PF00514	IPR000225 [Display all genes with this domain]
SMART	313	353	Armadillo	SM00185	IPR000225 [Display all genes with this domain]
PROSITE profiles	324	366	Armadillo	PS50176	IPR000225 [Display all genes with this domain]
SMART	354	394	Armadillo	SM00185	IPR000225 [Display all genes with this domain]
Pfam	355	393	Armadillo	PF00514	IPR000225 [Display all genes with this domain]
SMART	395	435	Armadillo	SM00185	IPR000225 [Display all genes with this domain]
Pfam	397	434	Armadillo	PF00514	IPR000225 [Display all genes with this domain]
SMART	477	517	Armadillo	SM00185	IPR000225 [Display all genes with this domain]
SMART	520	561	Armadillo	SM00185	IPR000225 [Display all genes with this domain]
Gene3D	257	397	Armadillo-like helical	1.25.10.10	IPR011989 [Display all genes with this domain]
Gene3D	406	562	Armadillo-like helical	1.25.10.10	IPR011989 [Display all genes with this domain]
Superfamily	283	562	Armadillo-type fold	SSF48371	IPR016024 [Display all genes with this domain]
CDD	189	241	PUB protein, U-box domain, plant	cd16664	IPR045210 [Display all genes with this domain]
PROSITE profiles	187	261	U-box domain	PS51698	IPR003613 [Display all genes with this domain]
Pfam	188	258	U-box domain	PF04564	IPR003613 [Display all genes with this domain]
SMART	191	254	U-box domain	SM00504	IPR003613 [Display all genes with this domain]
Gene3D	187	256	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	566	586
MobiDBLite	566	609
Seg	328	338
Seg	566	586
SignalP	1	16
Ncoils	60	80

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