Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: KN539013.1_FGT020

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Location

Scaffold KN539013.1: 40,085-44,987 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 30 domains and features and maps to 35 oligo probes.

Gene

This transcript is a product of gene KN539013.1_FG020 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	Flags
-	KN539013.1_FGT020	1989	662aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	239	272	-	PS50294	-
PROSITE profiles	342	376	-	PS50294	-
PANTHER	1	410	WD repeat-containing protein WDR44/Dgr2	PTHR14221	IPR040324 [Display all genes with this domain]
SMART	232	271	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	239	270	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	239	280	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	335	373	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	337	372	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	342	382	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	376	425	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	379	409	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	437	477	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	478	519	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	493	518	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE patterns	258	272	WD40 repeat, conserved site	PS00678	IPR019775 [Display all genes with this domain]
Superfamily	237	522	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	167	411	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]
Gene3D	412	553	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	68
MobiDBLite	128	138
MobiDBLite	128	158
MobiDBLite	175	220
MobiDBLite	179	196
MobiDBLite	210	219
MobiDBLite	560	632
MobiDBLite	585	606
MobiDBLite	613	623
Seg	125	138
Seg	147	155
Seg	352	364

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