We need your help! Has Ensembl saved you time or effort? Please take 15 minutes to fill in a survey and help EMBL-EBI make the case for why open data resources are critical to life science research.
https://www.surveymonkey.com/r/QGFMBH8?channel=[webpage]

Ensembl Genomes HomeEnsembl Plants HomeEnsembl Plants Home ▼
More ▼
    Search »
    Oryza longistaminata (O_longistaminata_v1.0) ▼

    Favourite species

    All species

    Recent locations

    Transcript-based displays

    Configure this page

    Custom tracks

    Export data

    Bookmark this page

    Transcript: KN538968.1_FGT007

    Location

    Scaffold KN538968.1: 136,588-144,177 reverse strand.

    About this transcript

    This transcript has 16 exons, is annotated with 34 domains and features and maps to 41 oligo probes.

    Gene

    This transcript is a product of gene KN538968.1_FG007 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeFlags
    -KN538968.1_FGT0071557518aa
     
    Protein coding
    		Ensembl Canonical

    Domains & features

    Domains

    Show/hide columns
    • Domain source
    • Start
    • End
    • Description
    • Accession
    • InterPro
    Download what you seeDownload whole table
    Domain sourceStartEndDescriptionAccessionInterPro
    PANTHER289513-PTHR19879-
    PROSITE profiles305339-PS50294-
    CDD305513-cd00200-
    PROSITE profiles347384-PS50294-
    PROSITE profiles389426-PS50294-
    PROSITE profiles431466-PS50294-
    Prints324338G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
    Prints366380G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
    Prints450464G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
    Pfam1496TFIID subunit TAF5, NTD2 domainPF04494IPR007582 [Display all genes with this domain]
    CDD17128TFIID subunit TAF5, NTD2 domaincd08044IPR007582 [Display all genes with this domain]
    Gene3D498TFIID subunit TAF5, NTD2 domain superfamily1.25.40.500IPR037264 [Display all genes with this domain]
    Superfamily10127TFIID subunit TAF5, NTD2 domain superfamilySSF160897IPR037264 [Display all genes with this domain]
    SMART298337WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam304337WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles305346WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART340379WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam342379WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles347388WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART382421WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam383421WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles389430WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART424463WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam425463WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles431472WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    PROSITE patterns366380WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
    PROSITE patterns408422WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
    PROSITE patterns450464WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
    Superfamily289512WD40-repeat-containing domain superfamilySSF50978IPR036322 [Display all genes with this domain]
    Gene3D285379WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]
    Gene3D380513WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]

    Other features

    Show/hide columns
    • Feature type
    • Start
    • End
    Download what you seeDownload whole table
    Feature typeStartEnd
    MobiDBLite175194
    Seg90107
    Ncoils165185

    This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our Privacy Policy and Terms of Use

    I Agree