Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: KN538895.1_FGT003

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Location

Scaffold KN538895.1: 157,658-159,334 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 18 domains and features and maps to 24 oligo probes.

Gene

This transcript is a product of gene KN538895.1_FG003 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	Flags
-	KN538895.1_FGT003	1677	558aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	43	557	U3 small nucleolar RNA-associated protein 18	PTHR18359	IPR045161 [Display all genes with this domain]
SMART	245	284	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	256	283	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	376	414	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	381	414	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	389	423	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	417	457	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	431	456	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	509	551	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Superfamily	255	552	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	234	553	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	1	74
MobiDBLite	56	74
MobiDBLite	126	145
MobiDBLite	131	145
Seg	41	77
Seg	123	134
Ncoils	42	79

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