Oryza longistaminata (O_longistaminata_v1.0) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesGeneral identifiersOligo probesSupporting evidenceID HistoryTranscript historyProtein history.
Scaffold KN538838.1: 164,947-168,424 forward strand.
This transcript has 4 exons, is annotated with 16 domains and features and maps to 29 oligo probes.
This transcript is a product of gene KN538838.1_FG053 Show transcript tableHide transcript table
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| Domain source | Start | End | Description | Accession | InterPro |
|---|---|---|---|---|---|
| PANTHER | 30 | 249 | - | PTHR47361 | - |
| Superfamily | 34 | 90 | - | SSF57850 | - |
| SMART | 41 | 83 | Zinc finger, RING-type | SM00184 | IPR001841 [Display all genes with this domain] |
| Pfam | 41 | 84 | Zinc finger, RING-type | PF13639 | IPR001841 [Display all genes with this domain] |
| PROSITE profiles | 41 | 84 | Zinc finger, RING-type | PS50089 | IPR001841 [Display all genes with this domain] |
| PROSITE patterns | 59 | 68 | Zinc finger, RING-type, conserved site | PS00518 | IPR017907 [Display all genes with this domain] |
| Gene3D | 25 | 90 | Zinc finger, RING/FYVE/PHD-type | 3.30.40.10 | IPR013083 [Display all genes with this domain] |
| Feature type | Start | End |
|---|---|---|
| MobiDBLite | 175 | 269 |
| MobiDBLite | 228 | 239 |
| MobiDBLite | 240 | 249 |
| MobiDBLite | 254 | 269 |
| Seg | 25 | 41 |
| Seg | 124 | 135 |
| Seg | 219 | 239 |
| Seg | 252 | 265 |
| Ncoils | 227 | 247 |
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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