Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: BGIOSGA020547-TA

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Location

Chromosome 6: 31,922,551-31,927,971 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 16 domains and features, is associated with 9 variant alleles and maps to 51 oligo probes.

Gene

This transcript is a product of gene BGIOSGA020547 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	BGIOSGA020547-TA	2187	728aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8B2H1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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General identifiers

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This transcript corresponds to the following database identifiers:

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External database	Database identifier
BGI Gene	LOC_Os06g49800 [Target %id: 99; Query %id: 81] ubiquitin interaction motif family protein, expressed [view all locations]
EST Cluster (BGI Indica)	alldata.seq.screen.Contig10661 [view all locations]
European Nucleotide Archive	CM000131 [align] [view all locations]
GeneIndex	TC287005 Tentative Annotation: Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C07, full insert sequence [view all locations]
INSDC protein ID	EEC81301.1 [align] [view all locations]
IRGSP/RAP Gene	Os06g0712400 AK067573 [view all locations]
PlantGDB Transcript	PUT-157a-Oryza_sativa-0131580 PlantGDB-assembled Unique Transcript-fragment derived from Oryza_sativa mRNAs Jan_23_2007 (based on GenBank release 157). [view all locations]
UniGene	Os.20605 [Target %id: 99; Query %id: 81] Os06g0712400 [view all locations]
UniParc	UPI00018F09FA [view all locations]
UniProtKB/TrEMBL	B8B2H1.62 [Target %id: 100; Query %id: 100] [align] MINDY deubiquitinase domain-containing protein [view all locations]

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