Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: BGIOSGA019412-TA

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Location

Chromosome 5: 8,779,167-8,782,171 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 22 domains and features, is associated with 5 variant alleles and maps to 44 oligo probes.

Gene

This transcript is a product of gene BGIOSGA019412 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	BGIOSGA019412-TA	1176	391aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2Y1W9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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General identifiers

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This transcript corresponds to the following database identifiers:

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External database	Database identifier
BGI Gene	LOC_Os12g16690 [Target %id: 99; Query %id: 34] ubiquitin-protein ligase/ zinc ion binding protein, putative, expressed [view all locations]
European Nucleotide Archive	CM000130 [align] [view all locations]
GeneIndex	TC303075 Tentative Annotation: UP\|Q2QUC7_ORYSA (Q2QUC7) Expressed protein, complete [view all locations]
INSDC protein ID	EAY97079.1 [align] [view all locations]
IRGSP/RAP Gene	Os12g0267900 AK072042 [view all locations]
PlantGDB Transcript	PUT-157a-Oryza_sativa-41280 PlantGDB-assembled Unique Transcript-fragment derived from Oryza_sativa mRNAs Jan_23_2007 (based on GenBank release 157). [view all locations]
STRING	39946.A2Y1W9 [view all locations]
UniGene	Os.49355 [Target %id: 99; Query %id: 36] Os12g0267900 [view all locations]
UniParc	UPI0000F11F43 [view all locations]
UniProtKB/TrEMBL	A2Y1W9.87 [Target %id: 100; Query %id: 100] [align] RING-type E3 ubiquitin transferase [view all locations]

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