Transcript: BGIOSGA024756-TA
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- BGIOSGA024756-TA 459 152aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
B8B7L6 A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.html Ensembl Canonical,
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{"provisional":{"expect":["variants","variants"],"ref":{"style":[[0,""],[0,"background-color:#fff9af;color:#1044ee"],[32,"333333"],[-11,"fff;color:#1044ee"],[11,"333333"],[-32,"color:#1044ee"],[12,"e;background-color:#ffffff"],[-5,"333333"],[5,"3;background-color:#fff9af"],[23,"fff"]]},"flourishes":{},"seq":[{"style":[7]},-6,{"style":[7,-38,0]},{"style":[9,4,-1,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2]},{"style":[9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8]},{"style":[9,-2,2,-1,1,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,9,-1,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2]},{"style":[9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8]},{"style":[9,3,-1,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1]},{"style":[6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8]},{"style":[4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8]},{"style":[9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,5,0]},{"style":[7]},-6,{"style":[7,-38,0]},{"style":[7]},-6,{"style":[7,-38,0]}],"legend":{"other":{"utr":{"label":null,"class":"cu","text":"UTR","default":"#ffdf33","config":"utr"}},"exons":{"exon0":{"config":"exon0","default":null,"text":"An exon","class":"e0","label":"#333333"},"exon1":{"class":"e1","text":"Another exon","default":null,"config":"exon1","label":"#1044ee"}},"_messages":[],"codons":{"c1":{"config":"c1","default":"#fff9af","text":"Alternating codons","class":"c1","label":null},"c0":{"class":"c0","text":"Alternating codons","default":"#ffffff","config":"c0","label":null}}}},"url":"/Oryza_indica/Component/Transcript/Sequence_cDNA/sequence?g=BGIOSGA024756;r=7%3A3484039-3488122;t=BGIOSGA024756-TA;db=core;time=1743747473132.132;adorn=only"}
1 ATGTCGACGCCGGCGAGGAAGCGGCTGATGCGGGACTTCAAGCGGCTGCAGCAGGACCCC 60
1 ATGTCGACGCCGGCGAGGAAGCGGCTGATGCGGGACTTCAAGCGGCTGCAGCAGGACCCC 60
1 -M--S--T--P--A--R--K--R--L--M--R--D--F--K--R--L--Q--Q--D--P- 20
61 CCCGCGGGGATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATC 120
61 CCCGCGGGGATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATC 120
21 -P--A--G--I--S--G--A--P--H--D--N--N--I--M--L--W--N--A--V--I- 40
121 TTCGGGCCGGATGATACGCCGTGGGACGGAGGCACGTTCAAGCTTACCTTGCAGTTTACA 180
121 TTCGGGCCGGATGATACGCCGTGGGACGGAGGCACGTTCAAGCTTACCTTGCAGTTTACA 180
41 -F--G--P--D--D--T--P--W--D--G--G--T--F--K--L--T--L--Q--F--T- 60
181 GAAGATTATCCCAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAAT 240
181 GAAGATTATCCCAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAAT 240
61 -E--D--Y--P--N--K--P--P--T--V--R--F--V--S--R--M--F--H--P--N- 80
241 ATTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATAT 300
241 ATTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATAT 300
81 -I--Y--A--D--G--S--I--C--L--D--I--L--Q--N--Q--W--S--P--I--Y- 100
301 GATGTTGCTGCCATATTGACTTCAATTCAGTCTTTGCTGTGTGATCCAAACCCCAACTCT 360
301 GATGTTGCTGCCATATTGACTTCAATTCAGTCTTTGCTGTGTGATCCAAACCCCAACTCT 360
101 -D--V--A--A--I--L--T--S--I--Q--S--L--L--C--D--P--N--P--N--S- 120
361 CCAGCAAACTCAGAAGCTGCCAGACTGTTTAGTGAGAACAAGCGAGAGTACAACCGCAAG 420
361 CCAGCAAACTCAGAAGCTGCCAGACTGTTTAGTGAGAACAAGCGAGAGTACAACCGCAAG 420
121 -P--A--N--S--E--A--A--R--L--F--S--E--N--K--R--E--Y--N--R--K- 140
421 GTTCGTGAGATCGTGGAGCAGAGCTGGACAGCTGACTAG 459
421 GTTCGTGAGATCGTGGAGCAGAGCTGGACAGCTGACTAG 459
141 -V--R--E--I--V--E--Q--S--W--T--A--D--*- 152
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