Oryza sativa Indica Group (ASM465v1)
Description

Defective in cullin neddylation protein [Source:UniProtKB/TrEMBL;Acc:A2YB06]

Location
About this transcript

This transcript has 11 exons, is annotated with 15 domains and features, is associated with 1 variant allele and maps to 48 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-BGIOSGA021599-TA753250aa
 
Protein coding
A2YB06 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
Markup
  • loading
Show/hide columns
  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........tcctctccccccctaccctaccccgagctcgccacccgatccgatcgaag
1BGIOSGA021599-TA.17,957,6767,957,674003
ATG                                                         
 Intron 1-27,957,6737,957,417257
gttagtacctcacctcgccccccgt..........aggttggttgtttttgtgtttgcag
2BGIOSGA021599-TA.27,957,4167,957,3550262
CATAAGCTGGGGAGAGGAAGCCGCGACAAGGTGCAGCAGTTCATGACCATAACTGGTGCG
AG                                                          
 Intron 2-37,957,3547,956,707648
gtgggtgggatcatttatttgctcc..........taagtacatttgttaacttatgcag
3BGIOSGA021599-TA.37,956,7067,956,57321134
TGAGAAGGTCGCCCTTCAGGCCCTGAAAGCTAGTGATTGGCACTTGGAAGGAGCTTTTGA
TTTTTTCTACAGCCAACCACAAATTTCTCTGACGAACTCTCGGCATCTTGAAGATCTGTA
CAACAGATACAAAG                                              
 Intron 3-47,956,5727,956,389184
gtattgatcttcattgccttaacta..........caaggtggtataatttctttttcag
4BGIOSGA021599-TA.47,956,3887,956,3301059
AACCTGATGTTGATATGATCATGGTGGAAGGTGTATCTCAGTTTTGCACTGATCTTCAG 
 Intron 4-57,956,3297,955,673657
gtaagaaacagctatttatcttccc..........atgtatgctttgttttgattttcag
5BGIOSGA021599-TA.57,955,6727,955,6490024
GTGGATCCCCAGGATATTGTTATG                                    
 Intron 5-67,955,6487,955,464185
gtatgcattttagcttcttctgggc..........gaccactgatttttgttgttaacag
6BGIOSGA021599-TA.67,955,4637,955,3810283
CTTGTCATATCATGGCACATGAAAGCTGCCACAATGTGTGAATTTACTCGCCAGGAATTC
ATTGGTGGACTGCAGTCAATTGG                                     
 Intron 6-77,955,3807,955,28398
gtgagtgccattttcaatcatggtg..........catatatcccgggtggtatttgcag
7BGIOSGA021599-TA.77,955,2827,955,2182165
GGTGGATTCAATTGAAAAGCTCCGTGAGAAATTGCCATCTTTACGGGCTGAGATAAAAGA
TGACC                                                       
 Intron 7-87,955,2177,955,046172
gtatgtgttttctttgtgtgaagtt..........gtgtggttactctttcctcactcag
8BGIOSGA021599-TA.87,955,0457,954,9961050
ATAAATTCCGTGAGATATACAACTTTGCTTTTGCTTGGGCTAGGGAAAAG          
 Intron 8-97,954,9957,954,855141
gttagcctcagttgaagaatatttg..........ctgaaatatgctcttgatcttacag
9BGIOSGA021599-TA.97,954,8547,954,75300102
GGTCAAAAATCTCTCGCACTGGAGACTGCTCTTGGAATGTGGCAGTTGCTCTTTGCTGAA
AGGCACTGGCCCCTTATCGACCATTGGTGCCAGTTTTTACAG                  
 Intron 9-107,954,7527,954,643110
gtatgcctcaaaggtggttccatgt..........ctaatttaaatccttcaaatttcag
10BGIOSGA021599-TA.107,954,6427,954,5830060
GTGAGGCATAATAAAGCCATTTCTAGGGACACATGGTCTCAACTGTTGGAATTTGTCAAG
 Intron 10-117,954,5827,954,315268
gtaccactgttaatccctcctttct..........ctaaatatgtgttctgttatcgcag
11BGIOSGA021599-TA.117,954,3147,954,20400111
ACGATCGATCCACAGTTATCCAACTACGACGAAGAAGGTGCTTGGCCCTACCTAATAGAT
GAATTTGTGGAGTACCTAACCGAGAATGGATTCGTTCAGCTTAGGAAGTGA         
3' downstream sequence
acaatgggaggcccacattctcactacttcaaatacaatcatgattgggc..........