Oryza sativa Indica Group (ASM465v1)
Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A2Y5R1]

Location
About this transcript

This transcript has 1 exon, is annotated with 27 domains and features, is associated with 140 variant alleles and maps to 25 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-BGIOSGA020048-TA2034677aa
 
Protein coding
A2Y5R1 Ensembl Canonical
Markup
  • loaded
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........tccaattcgatttgttcgttcggttactgcaaaagaaagtcagcaacaaa
1BGIOSGA020048-TA.124,889,62724,891,660002,034
ATGGCCAACGCGAGGAACGCGGCTGCCGCGTCGCCGCCGCCGCCGTCGTCGTCTTCTTCG
TATTCCTCGTCGGCGTCCGACGGGGAGATCCTCCGATCGCTGCACCGCCTGGCGAGGGAT
CTGGCTGCGGCGGAGGCGCCGGCGCCGTTCTTGGAGACGGTGTTCGCGGCGGTGTCCAGG
CGCGCGAAGCTTCTCGCCGCGGTGTTCGACGACCTGCTCCGGTGCGGGAGGCTGCCGCGG
TCGGCGTCGCTGTGCCTGCGCGAGGTGCTGCTCGTGCTGCAGCGGTTCAAGGCGGTGGTG
GCCGACTGCTCGGCGCGCAGCCGGATGCGGCTGCTACTGCAGGCCGACGAGGTGGCGGCG
CGGGTGCGTGAGCTGCAGCATGACCTGGCCACGCTGCTGGATCTTCTCCCCGTTCCCGAG
CTCGGGCTCGCCGACGACGTGGTGGACCTCCTCGCGCTCGCGTCCCGGCAGTGCCGGCGG
AGCTCGCCGTCGGCGGACGCCGCGGAGCACGAGCTGAAGACCGGGGTGCTGGCGCTGATC
CAGGAGGTGGAGAGGGAGATCGTGCCGGAGAGGGAGAGGCTGGAGGGCATCCTCGAGGAG
GTTGGCATCAACGACCCGGCGTGCTGCAGCGACGAGATCGAGACACTGGAGCGGGAGATC
GGCGACCGCGTGGCGGAGAGGTGGACGTCGGCCATGATTGCGCTCGTTGGGCTCCTCCGG
TACGCCAAGTGCGTCCTCTTCACCGCGGCCACGCCGCGGCCGATGGACACCAAGGTGGAT
GTTGACGACGATGACGATGACGACGACGCCGAGCCGCCGTCGCCGCCGCCGGACTTCCGG
TGCCCCATCTCTCTCGATCTGATGCGCGACCCGGTTGTGTCGGCGAGCGGCCAGACGTAC
GACCGGGAGTCCATCACCCGGTGGTTCGGCTCCGGCAAGTCGACGTGCCCCAAGACTGGG
CAGGTGCTGGCCAATCTGGAGCTTGTCCCCAACAAGGCGCTCAAGAACTTGATCTCGCGG
TGGTGCCGGGAGAACGGCGTCGCCATGGAGAGCTCCGAGCCAAGCAAGCCCGAGCCAGCG
CCGGTGGTGACCGCGAACAAGGCGGCGTTGGAGGCGGCGCGCATGACGGCGTCGTTCCTC
GTCAAGAAGCTCTCCGTCTCCTTCTCCCCCGCCGCGGCCAACCGCGTGGTGCACGAGATC
CGGCAGCTCGCCAGGTCCGGCAACGACACGCGCGCCTTCATCGGGGAGGCCGGCGCCGTC
CCGCTCCTCGTGCCGCTGCTCCACTCCGACGACACCGCCACCCAGCTCAACGCCGTCACG
GCGCTGCTCAACCTGTCCATCCTCGACGCCAACAAGAAGCGCATCATGCACGCCGAGGGC
GCCGTCGAGGCGATCTGCCACGCCATGGGCTCCGGCGCGACGTGGCGCGCCAAGGAGAAC
GCGGCGGCCACCGTGCTCAGCCTGGCGTCCGTCCATTCCTACCGCCGCCGGCTTGGCCGG
AACCCACGCGTCGTCGAGAGGGTCGTGCACCTCGTGCGCACCGGCCCCTCCAGCACCAAG
AAGGACGCGATCGCCGCGCTCCTGTGCCTGTCCGGCGAGAGGGAGAACGTCGGGAAGCTC
GTGGAAGCCGGCGCCGCGGAGGCGGCGCTGTCGGCGATCAGCGAGGAGGAGACCGCCGTG
GCGGTGCTGGCGTCGCTGGCCAAGCGCGGCGGCGCGGAGGCGATCGTGAACATCGACGGC
GCGGTGGTGCGCCTCGTGGCCGAGCTGCGGCGCGGCACGGAGTGGTCAAGGGAGTGCGCG
GCCGCCGCGCTGGTGCTGCTCTGCCGCCGCGTGGGCGCCGCCGTGGTGGCGCAGGTGATG
TCGGTCTCCGGCGTGGAGTGGGCGATATGGGAGCTGATGGCCACCGGCACGGAGCGCGCG
CGGCGCAAGGCCGCGTCGCTCGGCAGGGCATGCCGGCGTTGGGCCGCGGCGGAGCAAACC
GCGGAGTACCCCGCCACCTCCGACGTCACGACGACGGCCATTACAGCGTCGTGA      
3' downstream sequence
aattccaccacggccacattgattaattcataggagcagataaaatttcg..........