Oryza sativa Indica Group (ASM465v1) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 3: 3,569,151-3,572,333 forward strand.
This transcript has 10 exons, is annotated with 13 domains and features, is associated with 69 variant alleles and maps to 31 oligo probes.
This transcript is a product of gene BGIOSGA011894 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........tcttctactcgcgctcgcacgccctcgtcggccgcgccgccgccgcggtg
| ||||||
| 1 | BGIOSGA011894-TA.1 | 3,569,151 | 3,569,202 | 0 | 1 | 52 |
ATGGAGTCGCCGCCGGAGTCCTCCTCCTCCTCCCCGGTCCTCCTCAACATCG
|
| Intron 1-2 | 3,569,203 | 3,569,299 | 97 |
gttcgctccccttctccctttcgca..........ggtgatggtggtggctatggcgcag
| |||
| 2 | BGIOSGA011894-TA.2 | 3,569,300 | 3,569,409 | 1 | 0 | 110 |
GGGGCAAGAGGTACGCGACCACCGTCGAGACGCTCACGCAGCGGGAGCCCAGCTCCATGC TCGCCGCCATGTTCAGCGGGAGGCACACGCTCCCCCGGCACCCGGACACG |
| Intron 2-3 | 3,569,410 | 3,569,481 | 72 |
gtacgccgcgtactcaccagtggag..........ctcagaggatgaatggtgggtgcag
| |||
| 3 | BGIOSGA011894-TA.3 | 3,569,482 | 3,569,616 | 0 | 0 | 135 |
GGCATGGTGTTCGTGGACAGGGACGGGAAGCACTTCAGGCATGTCCTCAACTGGCTCAGG GACGGCGCCGTCCCAGACATGTCGGAGTCTGAGTACCAGCAGCTCCTGCGAGAAGCGGAG TACTACCAGTTGCTC |
| Intron 3-4 | 3,569,617 | 3,569,708 | 92 |
gtaattggaattctcgatcgtttct..........gaaaacatgatggtttgttttccag
| |||
| 4 | BGIOSGA011894-TA.4 | 3,569,709 | 3,569,864 | 0 | 0 | 156 |
GGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGAAAAATGATGAGAATTTCTCGGAG GCCGAATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGTCAGATTTCGT GGTGTAAATCTATCTGGCCTTGATCTATCCAAACTT |
| Intron 4-5 | 3,569,865 | 3,570,041 | 177 |
gtaaggtctttatttttgttctcta..........attttgtgacttttacggtctacag
| |||
| 5 | BGIOSGA011894-TA.5 | 3,570,042 | 3,570,125 | 0 | 0 | 84 |
GATTTATCAGAGGTGGACTTCAGCTATGCATGCATAAAGAATGCCAATTTTTCCTCTGCT TATCTTCGTAAAGCAAAGTTCAGG |
| Intron 5-6 | 3,570,126 | 3,570,316 | 191 |
gtatgccattcacacctaagttctt..........accttaccttgtatgttcatgacag
| |||
| 6 | BGIOSGA011894-TA.6 | 3,570,317 | 3,570,363 | 0 | 2 | 47 |
CTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATTTACATGA
|
| Intron 6-7 | 3,570,364 | 3,570,553 | 190 |
gtaagatggtccaaccagtttcttt..........gtaattgcttgatttggaataacag
| |||
| 7 | BGIOSGA011894-TA.7 | 3,570,554 | 3,570,627 | 2 | 1 | 74 |
GTGTGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGATAAAGCAAACCTTCAAAG TGCAAACCTACAGG |
| Intron 7-8 | 3,570,628 | 3,571,381 | 754 |
gtatgtaatccctttctttacctgt..........catttcctcagtgtcttattgtcag
| |||
| 8 | BGIOSGA011894-TA.8 | 3,571,382 | 3,571,458 | 1 | 0 | 77 |
TCCAACTGGATTTTCAGGGTGCTAATCTTATGGGCGCCAACTTGAGTGGAGCTAATCTTG AAGGGGCCAATCTCAAG |
| Intron 8-9 | 3,571,459 | 3,572,075 | 617 |
gtaacaaaaatgaccccattcaacc..........tactctaagctagtctgatttgcag
| |||
| 9 | BGIOSGA011894-TA.9 | 3,572,076 | 3,572,156 | 0 | 0 | 81 |
GGAGCTAAGTTGGCCGGTACAAACTTGGAATGTGCAAATCTTCAGCGAGCCTACTTGCGA GAAGTTGATTTGCGCGAAACT |
| Intron 9-10 | 3,572,157 | 3,572,279 | 123 |
gtatgttgtcctgcttgctgcttgc..........aactatgttttactttgacttacag
| |||
| 10 | BGIOSGA011894-TA.10 | 3,572,280 | 3,572,333 | 0 | 0 | 54 |
CATTTAACTGGTGCTAAGCTTGGAGGTGCAAATCTGGTTGGAGCTATCAGATAA
|
| 3' downstream sequence |
taccaagggaagaagcttatatcttctacatttacaattaaactgaaact..........
|
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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