Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: BGIOSGA009173-TA

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Location

Chromosome 2: 35,569,775-35,571,404 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 30 domains and features, is associated with 31 variant alleles and maps to 49 oligo probes.

Gene

This transcript is a product of gene BGIOSGA009173 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	BGIOSGA009173-TA	1197	398aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2XAD9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Exons

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Download sequence

Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........cttcaacgttacttgaaattcaaggtcataccgatatgcatgcttcgagg
1	BGIOSGA009173-TA.1	35,569,775	35,570,343	0	2	569	ATGGAACAAACTACAGGTGTTAGTGGCCATGAGCACATAATTGATATTCCAAGGGACAGT GGTCCATCTACTTCGACTTCCCATAGTGTTGCTAGAGAAAACCATGGAGAACCAAATCCT GTTGATAGATCTGCAACCAGAGCGCTAGTACCTGCTTTGCAGGCACCATCAGCAGTTGGT GCACCTAGTGCAGGACATACTTCAGGTGCTAGAAGAAGTGATAACTATGTTCGCCGGCAC AGAAGCCCTTTGAATTCTGGACTCTGGATTTCAATAGAAGTTCTTGTCAATGTGAGCCAA ATTGTAGCTGCTATTGTTGTGCTTTCTCTTTCAAGAAAGGAACATCCGCAAGCTCCATTA TTTGAGTGGGTCATAGGTTATACAGTTGGTTGTTTTGCTACACTACCCCATCTTTATTGG CGCTATATACACCGCAATATTGTCAATGGTGAAAATGAGCCAGCACATACACTTCAAGGC TCCTCTCAGAACAATTCAACTGAGCCTTCTGCTAGTGCATCAGAGCGTCGAAGGAATGCT GCACGAAATGCAGTGCTCGCTAATCCAAG
	Intron 1-2	35,570,344	35,570,605			262	gtactttgttgtgcatcttttgcat..........tatttaaagacaaatgccttttcag
2	BGIOSGA009173-TA.2	35,570,606	35,570,731	2	2	126	GATTAATGCTCTTTTTGACCACTTCAAGATGGCCTTGGATTGTTTCTTTGCTGTGTGGTT CGTCGTAGGAAATGTGTGGATATTTGGCGGGCGTTCTTCTGCTGCCGATGCTCCAAACTT GTACAG
	Intron 2-3	35,570,732	35,570,801			70	gtaaatacaaatattttttgtgtgg..........tgttgctgacttttttccctgccag
3	BGIOSGA009173-TA.3	35,570,802	35,571,087	2	0	286	GTTATGTATTGTGTTCCTTACCTTTAGTTGTATTGGGTATGCCATGCCTTTCATCCTCTG TGCAATGATATGCTGCTGCCTGCCCTGCATCATATCTGTTATGGGATTTAGAGAAGATAC AAACAATACAAGAGGGGCTACCTCAGAATCCATCAATTCTCTTCCAACATACAAATTCAA AACCAAGAAACGCCGTCATAGTTCAGGAAATGAAGCTGAAGGCCAAGATGGTGGGATAGT AGCTGCAGGGACTGACAAGGAGCGGTCACTATCTGCTGAGGATGCT
	Intron 3-4	35,571,088	35,571,188			101	gtatgcccccctcctctcacttttt..........gtgcctgtaccctttgattttgcag
4	BGIOSGA009173-TA.4	35,571,189	35,571,404	0	0	216	GTTTGTTGCATCTGTCTTGCAAAGTATGCACACAATGATGAGCTTCGTGAACTTCCCTGC ACACATTGTTTCCACAAGGAATGTGTTGATAAATGGCTGAAGATTAATGCACTTTGCCCA TTGTGCAAATCTGAGATAGCGAGCTCATCTGGAACATCTGATACTCGTCGCTCTGACCAC ACAGATATTCCTGTGCAGGAGATTGAAATGCATTAG
	3' downstream sequence						ggtgatctgctttctgaggtaatacgacagaatacagttacttgtggtga..........

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