Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Custom tracks

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Transcript: BGIOSGA025246-TA

.

Location

Chromosome 7: 3,976,948-3,981,155 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 19 domains and features, is associated with 7 variant alleles and maps to 33 oligo probes.

Gene

This transcript is a product of gene BGIOSGA025246 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	BGIOSGA025246-TA	2661	886aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2YIQ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

.

Domains & features

.

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	1	885	ETO1-like	PTHR44203	IPR044631 [Display all genes with this domain]
Gene3D	178	319	SKP1/BTB/POZ domain superfamily	3.30.710.10	IPR011333 [Display all genes with this domain]
Superfamily	181	276	SKP1/BTB/POZ domain superfamily	SSF54695	IPR011333 [Display all genes with this domain]
SMART	509	542	Tetratricopeptide repeat	SM00028	IPR019734 [Display all genes with this domain]
SMART	635	668	Tetratricopeptide repeat	SM00028	IPR019734 [Display all genes with this domain]
PROSITE profiles	709	742	Tetratricopeptide repeat	PS50005	IPR019734 [Display all genes with this domain]
SMART	709	742	Tetratricopeptide repeat	SM00028	IPR019734 [Display all genes with this domain]
SMART	838	871	Tetratricopeptide repeat	SM00028	IPR019734 [Display all genes with this domain]
Superfamily	344	503	Tetratricopeptide-like helical domain superfamily	SSF48452	IPR011990 [Display all genes with this domain]
Gene3D	350	548	Tetratricopeptide-like helical domain superfamily	1.25.40.10	IPR011990 [Display all genes with this domain]
Superfamily	473	738	Tetratricopeptide-like helical domain superfamily	SSF48452	IPR011990 [Display all genes with this domain]
Gene3D	598	788	Tetratricopeptide-like helical domain superfamily	1.25.40.10	IPR011990 [Display all genes with this domain]
Superfamily	693	878	Tetratricopeptide-like helical domain superfamily	SSF48452	IPR011990 [Display all genes with this domain]
Gene3D	789	885	Tetratricopeptide-like helical domain superfamily	1.25.40.10	IPR011990 [Display all genes with this domain]

Other features

Show/hide columns

Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
Seg	31	46
Seg	609	614
Alphafold	1	886
Alphafold	1	886
Ncoils	761	788

.

Personal Data