Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: BGIOSGA024268-TA

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Location

Chromosome 7: 16,915,884-16,923,210 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 28 domains and features, is associated with 10 variant alleles and maps to 74 oligo probes.

Gene

This transcript is a product of gene BGIOSGA024268 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	BGIOSGA024268-TA	2952	983aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8B6E2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	12	108	-	3.10.20.90	-
PANTHER	14	982	-	PTHR15204	-
CDD	26	93	-	cd17039	-
PROSITE patterns	50	75	Ubiquitin conserved site	PS00299	IPR019954 [Display all genes with this domain]
Prints	55	75	Ubiquitin domain	PR00348	IPR019956 [Display all genes with this domain]
Prints	76	97	Ubiquitin domain	PR00348	IPR019956 [Display all genes with this domain]
SMART	24	95	Ubiquitin-like domain	SM00213	IPR000626 [Display all genes with this domain]
PROSITE profiles	24	99	Ubiquitin-like domain	PS50053	IPR000626 [Display all genes with this domain]
Pfam	26	95	Ubiquitin-like domain	PF00240	IPR000626 [Display all genes with this domain]
Superfamily	21	95	Ubiquitin-like domain superfamily	SSF54236	IPR029071 [Display all genes with this domain]

Other features

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Feature type
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End

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Feature type	Start	End
MobiDBLite	239	254
MobiDBLite	239	258
MobiDBLite	489	500
MobiDBLite	489	510
MobiDBLite	535	560
MobiDBLite	595	628
MobiDBLite	599	626
MobiDBLite	665	675
MobiDBLite	665	726
MobiDBLite	682	694
MobiDBLite	716	726
MobiDBLite	754	780
MobiDBLite	763	772
MobiDBLite	872	897
Seg	278	295
Seg	409	427
Seg	859	870
Alphafold	1	983

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