Oryza sativa Indica Group (ASM465v1)
Description

Transducin/WD40 repeat-like superfamily protein [Source:Projected from Arabidopsis thaliana (AT4G11270) TAIR;Acc:AT4G11270]

Location
About this transcript

This transcript has 8 exons, is annotated with 23 domains and features, is associated with 132 variant alleles and maps to 37 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • Flags
NameTranscript IDbpProteinBiotypeFlags
-BGIOSGA021320-TA43921463aa
 
Protein coding
Ensembl Canonical

Domains

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  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
Superfamily9371259Armadillo-type foldSSF48371IPR016024 [Display all genes with this domain]
PANTHER31463WD repeat-containing protein 7/72PTHR44099IPR049916 [Display all genes with this domain]
SMART542WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART5292WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART507555WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam513555WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles539564WD40 repeatPS50082IPR001680 [Display all genes with this domain]
SMART558603WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART606653WD40 repeatSM00320IPR001680 [Display all genes with this domain]
PROSITE patterns542556WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
Superfamily16375WD40-repeat-containing domain superfamilySSF50978IPR036322 [Display all genes with this domain]
Superfamily28669WD40-repeat-containing domain superfamilySSF50978IPR036322 [Display all genes with this domain]
Gene3D5268WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]
Gene3D451770WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]

Other features

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  • Feature type
  • Start
  • End
Feature typeStartEnd
Seg2034
Seg4259
Seg88109
Seg113137
Seg150166
Seg204217
Seg224236
Seg14261437
SignalP GRAM POSITIVE123