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Oryza sativa Indica Group (ASM465v1)
Location
About this transcript

This transcript has 22 exons, is annotated with 44 domains and features, is associated with 175 variant alleles and maps to 89 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-BGIOSGA020788-TA53221773aa
 
Protein coding
B8B0Q6 Ensembl Canonical

Domains

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  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
Gene3D618708-3.10.20.90-
SMART16531762BromodomainSM00297IPR001487 [Display all genes with this domain]
Pfam16641738BromodomainPF00439IPR001487 [Display all genes with this domain]
PROSITE profiles16721735BromodomainPS50014IPR001487 [Display all genes with this domain]
Prints16751688BromodomainPR00503IPR001487 [Display all genes with this domain]
Prints16891705BromodomainPR00503IPR001487 [Display all genes with this domain]
Prints17051723BromodomainPR00503IPR001487 [Display all genes with this domain]
Prints17231742BromodomainPR00503IPR001487 [Display all genes with this domain]
PROSITE patterns16751734Bromodomain, conserved sitePS00633IPR018359 [Display all genes with this domain]
Gene3D16231772Bromodomain-like superfamily1.20.920.10IPR036427 [Display all genes with this domain]
Superfamily16481770Bromodomain-like superfamilySSF47370IPR036427 [Display all genes with this domain]
Pfam2265TAFII-230 TBP-bindingPF09247IPR009067 [Display all genes with this domain]
Superfamily2865TAFII-230 TBP-binding domain superfamilySSF47055IPR036741 [Display all genes with this domain]
PANTHER171772Transcription initiation factor TFIID subunit 1PTHR13900IPR040240 [Display all genes with this domain]
Pfam5531114Transcription initiation factor TFIID subunit 1, histone acetyltransferase domainPF12157IPR022591 [Display all genes with this domain]
PROSITE profiles636706Ubiquitin-like domainPS50053IPR000626 [Display all genes with this domain]
SMART636708Ubiquitin-like domainSM00213IPR000626 [Display all genes with this domain]
Pfam640708Ubiquitin-like domainPF00240IPR000626 [Display all genes with this domain]
Superfamily631708Ubiquitin-like domain superfamilySSF54236IPR029071 [Display all genes with this domain]

Other features

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  • Feature type
  • Start
  • End
Feature typeStartEnd
MobiDBLite110
MobiDBLite138
MobiDBLite1727
MobiDBLite413454
MobiDBLite421434
MobiDBLite442454
MobiDBLite12551281
MobiDBLite12661281
MobiDBLite14981553
MobiDBLite15031533
MobiDBLite15361545
MobiDBLite15951655
MobiDBLite15991609
MobiDBLite16101633
Seg1827
Seg4357
Seg147167
Seg192208
Seg306315
Seg465479
Seg9931007
Seg12421254
Seg15721581
Seg15981608
Seg17451759