Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Custom tracks

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Transcript: BGIOSGA012183-TA

.

Location

Chromosome 3: 7,564,443-7,567,937 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 22 domains and features, is associated with 32 variant alleles and maps to 31 oligo probes.

Gene

This transcript is a product of gene BGIOSGA012183 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	BGIOSGA012183-TA	1749	582aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2XE96	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

.

Domains & features

.

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	121	210	-	SSF57850	-
CDD	124	177	-	cd16773	-
Superfamily	197	266	-	SSF57850	-
CDD	204	268	-	cd20346	-
Gene3D	255	503	-	1.20.120.1750	-
Superfamily	267	324	-	SSF57850	-
Pfam	279	321	-	PF22605	-
CDD	280	333	-	cd22586	-
Pfam	337	581	Ariadne domain	PF19422	IPR045840 [Display all genes with this domain]
PANTHER	34	370	E3 ubiquitin ligase RBR family	PTHR11685	IPR031127 [Display all genes with this domain]
Pfam	59	92	E3 ubiquitin-protein ligase ARIH1-like, UBA-like domain	PF21235	IPR048962 [Display all genes with this domain]
Pfam	197	259	IBR domain	PF01485	IPR002867 [Display all genes with this domain]
SMART	197	259	IBR domain	SM00647	IPR002867 [Display all genes with this domain]
SMART	267	332	IBR domain	SM00647	IPR002867 [Display all genes with this domain]
PROSITE profiles	122	336	TRIAD supradomain	PS51873	IPR044066 [Display all genes with this domain]
PROSITE profiles	126	174	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
Gene3D	119	211	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

Show/hide columns

Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
MobiDBLite	1	15
MobiDBLite	1	25
MobiDBLite	541	566
Seg	13	34
Alphafold	1	582

.

Personal Data