Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: BGIOSGA008744-TA

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Location

Chromosome 2: 28,314,356-28,317,835 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 23 domains and features, is associated with 39 variant alleles and maps to 21 oligo probes.

Gene

This transcript is a product of gene BGIOSGA008744 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	BGIOSGA008744-TA	1794	597aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8AG45	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	47	571	-	PTHR12558	-
Pfam	398	439	-	PF13414	-
Pfam	8	296	Cdc23	PF04049	IPR007192 [Display all genes with this domain]
SMART	289	322	Tetratricopeptide repeat	SM00028	IPR019734 [Display all genes with this domain]
SMART	357	390	Tetratricopeptide repeat	SM00028	IPR019734 [Display all genes with this domain]
Pfam	358	389	Tetratricopeptide repeat	PF13181	IPR019734 [Display all genes with this domain]
PROSITE profiles	391	424	Tetratricopeptide repeat	PS50005	IPR019734 [Display all genes with this domain]
SMART	391	424	Tetratricopeptide repeat	SM00028	IPR019734 [Display all genes with this domain]
PROSITE profiles	425	458	Tetratricopeptide repeat	PS50005	IPR019734 [Display all genes with this domain]
SMART	425	458	Tetratricopeptide repeat	SM00028	IPR019734 [Display all genes with this domain]
SMART	459	494	Tetratricopeptide repeat	SM00028	IPR019734 [Display all genes with this domain]
SMART	495	528	Tetratricopeptide repeat	SM00028	IPR019734 [Display all genes with this domain]
SMART	536	569	Tetratricopeptide repeat	SM00028	IPR019734 [Display all genes with this domain]
Gene3D	4	65	Tetratricopeptide-like helical domain superfamily	1.25.40.10	IPR011990 [Display all genes with this domain]
Gene3D	90	353	Tetratricopeptide-like helical domain superfamily	1.25.40.10	IPR011990 [Display all genes with this domain]
Superfamily	197	334	Tetratricopeptide-like helical domain superfamily	SSF48452	IPR011990 [Display all genes with this domain]
Gene3D	354	564	Tetratricopeptide-like helical domain superfamily	1.25.40.10	IPR011990 [Display all genes with this domain]
Superfamily	357	523	Tetratricopeptide-like helical domain superfamily	SSF48452	IPR011990 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
Seg	54	83
Seg	154	165
Alphafold	1	597
Ncoils	171	191
Ncoils	261	281

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