Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: BGIOSGA007919-TA

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Location

Chromosome 2: 10,105,572-10,110,438 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 25 domains and features, is associated with 87 variant alleles and maps to 40 oligo probes.

Gene

This transcript is a product of gene BGIOSGA007919 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	BGIOSGA007919-TA	1677	558aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8AFA8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	150	228	-	cd18186	-
Pfam	173	237	-	PF21536	-
Gene3D	279	383	-	1.25.40.420	-
Superfamily	442	557	-	SSF49599	-
SMART	258	362	BTB/Kelch-associated	SM00875	IPR011705 [Display all genes with this domain]
Pfam	264	360	BTB/Kelch-associated	PF07707	IPR011705 [Display all genes with this domain]
SMART	147	245	BTB/POZ domain	SM00225	IPR000210 [Display all genes with this domain]
PROSITE profiles	154	214	BTB/POZ domain	PS50097	IPR000210 [Display all genes with this domain]
PANTHER	9	555	BTB/POZ domain-containing protein POB1-like	PTHR46336	IPR045890 [Display all genes with this domain]
Gene3D	147	278	SKP1/BTB/POZ domain superfamily	3.30.710.10	IPR011333 [Display all genes with this domain]
Superfamily	155	242	SKP1/BTB/POZ domain superfamily	SSF54695	IPR011333 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	11
MobiDBLite	1	30
MobiDBLite	48	76
MobiDBLite	118	140
MobiDBLite	120	130
Seg	5	13
Seg	20	25
Seg	50	56
Seg	77	89
Seg	120	145
Alphafold	1	558
Alphafold	1	558
Alphafold	1	558
Alphafold	1	558

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