Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: BGIOSGA000314-TA

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Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:B8A7R7]

Location

Chromosome 1: 42,895,091-42,897,994 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 19 domains and features, is associated with 35 variant alleles and maps to 60 oligo probes.

Gene

This transcript is a product of gene BGIOSGA000314 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	BGIOSGA000314-TA	2397	798aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A7R7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	92	728	-	PTHR23315	-
Superfamily	288	369	-	SSF57850	-
SMART	470	514	Armadillo	SM00185	IPR000225 [Display all genes with this domain]
PROSITE profiles	481	527	Armadillo	PS50176	IPR000225 [Display all genes with this domain]
SMART	516	554	Armadillo	SM00185	IPR000225 [Display all genes with this domain]
SMART	555	601	Armadillo	SM00185	IPR000225 [Display all genes with this domain]
Gene3D	413	738	Armadillo-like helical	1.25.10.10	IPR011989 [Display all genes with this domain]
Superfamily	436	710	Armadillo-type fold	SSF48371	IPR016024 [Display all genes with this domain]
CDD	294	346	PUB protein, U-box domain, plant	cd16664	IPR045210 [Display all genes with this domain]
PROSITE profiles	292	366	U-box domain	PS51698	IPR003613 [Display all genes with this domain]
Pfam	294	363	U-box domain	PF04564	IPR003613 [Display all genes with this domain]
SMART	296	359	U-box domain	SM00504	IPR003613 [Display all genes with this domain]
Gene3D	291	365	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

Show/hide columns

Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
MobiDBLite	732	763
MobiDBLite	742	755
Seg	116	127
Seg	263	274
Seg	742	755
Alphafold	1	798

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