Oryza glaberrima (Oryza_glaberrima_V1)
Location
About this transcript

This transcript has 1 exon, is annotated with 17 domains and features, is associated with 13 variant alleles and maps to 21 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ORGLA07G0074200.1945314aa
 
Protein coding
I1Q9F0 Ensembl Canonical

Superfamily

Protein domains and motifs from the SUPERFAMILY database.

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TIGRFAM

Protein domains and motifs from the TIGRFAM database.

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PROSITE patterns

Protein domains and motifs from the PROSITE patterns database.

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HAMAP

HAMAP families.

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PROSITE patterns

Protein domains and motifs from the PROSITE patterns database.

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Prints

Protein fingerprints (groups of conserved motifs) from the PRINTS database.

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PROSITE profiles

Protein domains and motifs from the PROSITE profiles database.

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PIRSF

Protein domains and motifs from the PIR (Protein Information Resource) Superfamily database.

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SFLD

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SMART

Protein domains and motifs from the SMART database.

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Pfam

Protein domains and motifs from the Pfam database.

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SFLD

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Gene3D

CATH/Gene3D families.

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HAMAP

HAMAP families.

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NCBIFAM

NCBIfam is a collection of protein families based on Hidden Markov Models (HMMs).

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TIGRFAM

Protein domains and motifs from the TIGRFAM database.

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NCBIFAM

NCBIfam is a collection of protein families based on Hidden Markov Models (HMMs).

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CDD

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Prints

Protein fingerprints (groups of conserved motifs) from the PRINTS database.

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CDD

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PIRSF

Protein domains and motifs from the PIR (Protein Information Resource) Superfamily database.

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PANTHER

PANTHER families.

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Gene3D

CATH/Gene3D families.

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PANTHER

PANTHER families.

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PROSITE profiles

Protein domains and motifs from the PROSITE profiles database.

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Pfam

Protein domains and motifs from the Pfam database.

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SMART

Protein domains and motifs from the SMART database.

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Superfamily

Protein domains and motifs from the SUPERFAMILY database.

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Configuring the display

Tip: use the 'Configure this page' link on the left to customise the protein domains and types of variants displayed above.
Please note the default 'Context' settings will probably filter out some intronic SNPs.
None of the variants are filtered out by the Source, Class and Type filters.
None of the intronic variants are removed by the Context filter.

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