Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Transcript: ORGLA10G0103800.1

Location

Chromosome 10: 13,044,032-13,047,652 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 22 domains and features, is associated with 39 variant alleles and maps to 44 oligo probes.

Gene

This transcript is a product of gene ORGLA10G0103800 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	ORGLA10G0103800.1	552	183aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I1QV05	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Population comparison

Variants in OB047:

Variant IdentifierVariant ID	Consequence Type	Chr: bp	Ref. allele	Cultivar genotype	Ambiguity	Codon	CDS coord.	Amino acids	Amino Acid Co-ordinateAA coord.	Class	Source	Evidence
tmp_10_13043990	SARA (Same As Ref. Assembly)	10:13043990	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13043992	SARA (Same As Ref. Assembly)	10:13043992	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13043993	SARA (Same As Ref. Assembly)	10:13043993	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044027	SARA (Same As Ref. Assembly)	10:13044027	T	T\|T	T	-	-	-	-	SNP	Barthii	-
tmp_10_13044094	SARA (Same As Ref. Assembly)	10:13044094	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044098	SARA (Same As Ref. Assembly)	10:13044098	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044102	SARA (Same As Ref. Assembly)	10:13044102	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044214	SARA (Same As Ref. Assembly)	10:13044214	G	G\|G	G	-	-	-	-	SNP	Barthii	-
tmp_10_13044410	SARA (Same As Ref. Assembly)	10:13044410	T	T\|T	T	-	-	-	-	SNP	Glab	-
tmp_10_13044416	SARA (Same As Ref. Assembly)	10:13044416	T	T\|T	T	-	-	-	-	SNP	Glab	-

Showing 1 to 10 of 15 entries

<<<12>>>

Variants in Og103469:

Variant IdentifierVariant ID	Consequence Type	Chr: bp	Ref. allele	Cultivar genotype	Ambiguity	Codon	CDS coord.	Amino acids	Amino Acid Co-ordinateAA coord.	Class	Source	Evidence
tmp_10_13043990	SARA (Same As Ref. Assembly)	10:13043990	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13043992	SARA (Same As Ref. Assembly)	10:13043992	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13043993	SARA (Same As Ref. Assembly)	10:13043993	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044094	SARA (Same As Ref. Assembly)	10:13044094	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044098	SARA (Same As Ref. Assembly)	10:13044098	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044102	SARA (Same As Ref. Assembly)	10:13044102	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044410	SARA (Same As Ref. Assembly)	10:13044410	T	T\|T	T	-	-	-	-	SNP	Glab	-
tmp_10_13044416	SARA (Same As Ref. Assembly)	10:13044416	T	T\|T	T	-	-	-	-	SNP	Glab	-
tmp_10_13045188	SARA (Same As Ref. Assembly)	10:13045188	A	A\|A	A	-	-	-	-	SNP	Glab	-

Variants in OgTOG5949:

Variant IdentifierVariant ID	Consequence Type	Chr: bp	Ref. allele	Cultivar genotype	Ambiguity	Codon	CDS coord.	Amino acids	Amino Acid Co-ordinateAA coord.	Class	Source	Evidence
tmp_10_13043990	SARA (Same As Ref. Assembly)	10:13043990	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13043992	SARA (Same As Ref. Assembly)	10:13043992	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13043993	SARA (Same As Ref. Assembly)	10:13043993	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044094	SARA (Same As Ref. Assembly)	10:13044094	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044098	SARA (Same As Ref. Assembly)	10:13044098	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044102	SARA (Same As Ref. Assembly)	10:13044102	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044410	SARA (Same As Ref. Assembly)	10:13044410	T	T\|T	T	-	-	-	-	SNP	Glab	-
tmp_10_13044416	SARA (Same As Ref. Assembly)	10:13044416	T	T\|T	T	-	-	-	-	SNP	Glab	-
tmp_10_13045188	SARA (Same As Ref. Assembly)	10:13045188	A	A\|A	A	-	-	-	-	SNP	Glab	-

Variants in OG45:

Variant IdentifierVariant ID	Consequence Type	Chr: bp	Ref. allele	Cultivar genotype	Ambiguity	Codon	CDS coord.	Amino acids	Amino Acid Co-ordinateAA coord.	Class	Source	Evidence
tmp_10_13043990	SARA (Same As Ref. Assembly)	10:13043990	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13043992	SARA (Same As Ref. Assembly)	10:13043992	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13043993	SARA (Same As Ref. Assembly)	10:13043993	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044094	SARA (Same As Ref. Assembly)	10:13044094	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044098	SARA (Same As Ref. Assembly)	10:13044098	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044102	SARA (Same As Ref. Assembly)	10:13044102	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044410	SARA (Same As Ref. Assembly)	10:13044410	T	T\|T	T	-	-	-	-	SNP	Glab	-
tmp_10_13044416	SARA (Same As Ref. Assembly)	10:13044416	T	T\|T	T	-	-	-	-	SNP	Glab	-
tmp_10_13045188	SARA (Same As Ref. Assembly)	10:13045188	A	A\|A	A	-	-	-	-	SNP	Glab	-

Variants in OB085:

Variant IdentifierVariant ID	Consequence Type	Chr: bp	Ref. allele	Cultivar genotype	Ambiguity	Codon	CDS coord.	Amino acids	Amino Acid Co-ordinateAA coord.	Class	Source	Evidence
tmp_10_13043990	SARA (Same As Ref. Assembly)	10:13043990	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13043992	SARA (Same As Ref. Assembly)	10:13043992	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13043993	SARA (Same As Ref. Assembly)	10:13043993	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044027	SARA (Same As Ref. Assembly)	10:13044027	T	T\|T	T	-	-	-	-	SNP	Barthii	-
tmp_10_13044094	SARA (Same As Ref. Assembly)	10:13044094	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044098	SARA (Same As Ref. Assembly)	10:13044098	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044102	SARA (Same As Ref. Assembly)	10:13044102	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044214	SARA (Same As Ref. Assembly)	10:13044214	G	G\|G	G	-	-	-	-	SNP	Barthii	-
tmp_10_13044410	SARA (Same As Ref. Assembly)	10:13044410	T	T\|T	T	-	-	-	-	SNP	Glab	-
tmp_10_13044416	SARA (Same As Ref. Assembly)	10:13044416	T	T\|T	T	-	-	-	-	SNP	Glab	-

Showing 1 to 10 of 15 entries

<<<12>>>

Variants in Ob100931:

Variant IdentifierVariant ID	Consequence Type	Chr: bp	Ref. allele	Cultivar genotype	Ambiguity	Codon	CDS coord.	Amino acids	Amino Acid Co-ordinateAA coord.	Class	Source	Evidence
tmp_10_13043990	SARA (Same As Ref. Assembly)	10:13043990	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13043992	SARA (Same As Ref. Assembly)	10:13043992	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13043993	SARA (Same As Ref. Assembly)	10:13043993	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044027	SARA (Same As Ref. Assembly)	10:13044027	T	T\|T	T	-	-	-	-	SNP	Barthii	-
tmp_10_13044094	SARA (Same As Ref. Assembly)	10:13044094	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044098	SARA (Same As Ref. Assembly)	10:13044098	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044102	SARA (Same As Ref. Assembly)	10:13044102	A	A\|A	A	-	-	-	-	SNP	Glab	-
tmp_10_13044214	SARA (Same As Ref. Assembly)	10:13044214	G	G\|G	G	-	-	-	-	SNP	Barthii	-
tmp_10_13044410	SARA (Same As Ref. Assembly)	10:13044410	T	T\|T	T	-	-	-	-	SNP	Glab	-
tmp_10_13044416	SARA (Same As Ref. Assembly)	10:13044416	T	T\|T	T	-	-	-	-	SNP	Glab	-

Showing 1 to 10 of 15 entries

<<<12>>>

Configuring the display

These cultivars are displayed by default: OB047, OB085, OG45, Ob100931, Og103469, OgTOG5949.
Select the "Configure this page" link in the left hand menu to customise which cultivars and types of variants are displayed in the tables above.

Transcript: ORGLA10G0103800.1

Population comparison

Variants in OB047:

Variants in Og103469:

Variants in OgTOG5949:

Variants in OG45:

Variants in OB085:

Variants in Ob100931:

Configuring the display

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Transcript: ORGLA10G0103800.1

Population comparison

Variants in OB047:

Variants in Og103469:

Variants in OgTOG5949:

Variants in OG45:

Variants in OB085:

Variants in Ob100931:

Configuring the display

About Us

Get help

Our sister sites

Follow us