Oryza glaberrima (Oryza_glaberrima_V1) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 12: 3,508,765-3,511,541 reverse strand.
This transcript has 6 exons, is annotated with 47 domains and features, is associated with 79 variant alleles and maps to 38 oligo probes.
This transcript is a product of gene ORGLA12G0044500 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........accgcggcggcggcggcggcggctccggcccgcggccgtcggcgcgcgac
| ||||||
| 1 | ORGLA12G0044500.1.exon1 | 3,511,541 | 3,510,293 | 0 | 1 | 1,249 |
ATGCTGATGCAGCGGCCGGCGAAGCCCATCACGCGGCGCCGGTCCGACGGCTGCCTCGCC GCGCGGGACGGCGGCTCCTCTGGAAAGCCACCACCGCCGTCGTCGCCGTCGGTGCGTCGT GTTCGATCCTTGCCGGCCCGGCACGCCGGCTGCGACGATGTCTCCCTCGTCGAGAAGTTT CGAAACGCCATGGCTAAACGTGATCTCCCCACCGCCGCCGTGCCCCCGACGACGCCGCCG CCGGCGGCGGCAGCGGCGGCGGCAGCGCCGGTGGATAAAGGCCGCACCGACGACGGCGGC GGCAAGGACCGCGACGACGCGACCAAGAACCAGGAGAGCAGCAAGGAGGTCGCCGTCGTC GCGGCGCCCAAGGATGCCGCCCCCGCGTCGAACACCCAGACCGGCGTGCAGCTGGGGCTA GAGGAGATCGAGAAGTTCATCGGCAACACCCCCATCGTGAAGCACCTGATGCGGCGCGGC CAGAGCCAGCATCACAGCGGCCAGCTCGCGTCGCCCTCCGGCGGCGCGCCGCCCAAGGCC GAGAAGCCGGCGGGCGGCAAGAAGAAGGGAGGCTGGCTCAAGAACATCAAGTCCGTCGCC ATCGGCTTCATCGACAGCGGCGGCAACAGCAAGTCGACCACATCCACGACCACCTCCTCC GCCGGCGCCAACGCCACCTCGTCGTCGTCATCCTCGGCGTCGTCGACGGAGCGGCTCAAG GTGCACCAATCCGGCAAGTCGTGCAAGGAGCTCACCGGGCTGTACATGTGCCAGGAGATC ATGGCGCACGAGGGGTCGATCTGGAGCATCAAGTTCAGCACCGACGGCCGGTGGCTGGCC AGCGCCGGCGAGGACCACGTGGTGCGCATCTGGCAGGTGGTGGAGGCGAACTCCCCGGCG TGCCTGCCGAACGACGGCCACTCGGGCCCCCTCCCGCCGCATCCCCCCGGCGCCGCGCCG GCGGACGGGACGTCGTCGTCGTCGACGCCAGCGCTGTCCCAGCTGTCCAAGAAGTCGGTG AAGGGGAAGAGCGGCAGGGACACGCTGCCGGAGCACCTCGTCGTCCCCGACAAGGTGTTC GCGCTCGCCGACCAGCCGGCATGCGTCCTCGAGGGCCACCAGGACGACGTGCTCGACCTC ACCTGGTCCAAGACCGACCAGCTTCTCTCCTCCTCCATGGACAAGACGGTGAGGCTTTGG GACACCACCACCAAGGCCTGCCTCAAGGTGTTCGCCCACAACGACTACG |
| Intron 1-2 | 3,510,292 | 3,510,192 | 101 |
gtcagcgtcgccattgattcgtttc..........tgaattgatttgatcgatcttgcag
| |||
| 2 | ORGLA12G0044500.1.exon2 | 3,510,191 | 3,510,034 | 1 | 0 | 158 |
TGACTTGCATCCAGTTCAACCCGGCGGACGACAGGTTCTTCATCAGTGGATCGCTGGACG CCAAGGTGCGGCTATGGAGTATCCCTGATCGGCAGGTCGTCGACTGGACCGACCTCAACG AGATGGTCACCGCCGCCTCCTACACCCCCGATGGCCAG |
| Intron 2-3 | 3,510,033 | 3,509,839 | 195 |
gtatctactctcgctagtctaatat..........tgatgtgtgaacaattcgaatcaag
| |||
| 3 | ORGLA12G0044500.1.exon3 | 3,509,838 | 3,509,787 | 0 | 1 | 52 |
GGCGCCATCATCGGCTCGCACAAGGGTAGCTGCCGGTTCTACAAGACAACAG
|
| Intron 3-4 | 3,509,786 | 3,509,677 | 110 |
gtagtacagtacattctctgttctt..........cggatttttttgggttttgttgcag
| |||
| 4 | ORGLA12G0044500.1.exon4 | 3,509,676 | 3,509,594 | 1 | 0 | 83 |
ATTGCAAGCTGGATCAGGAGGCGCAGATCGACATCGAGACGAAGAAGCGCAAGTCGCAGG CGAAGAAGATCACCGGCTTCCAG |
| Intron 4-5 | 3,509,593 | 3,509,489 | 105 |
gtacatgaacacaatgcatcacact..........ttggccatggccatggacacctcag
| |||
| 5 | ORGLA12G0044500.1.exon5 | 3,509,488 | 3,509,395 | 0 | 1 | 94 |
TTTGCTCCGGGGAACCCCTCCGAGGTGCTGGTCACCTCCGCCGACTCGCAGATCCGCGTC TTCGACGGCGTCACCATGGTCCAAAAATTCAGAG |
| Intron 5-6 | 3,509,394 | 3,509,301 | 94 |
gtgcgttggcggcggccatggatga..........tggtggtgtccgtggtggatgtcag
| |||
| 6 | ORGLA12G0044500.1.exon6 | 3,509,300 | 3,508,765 | 1 | 0 | 536 |
GTTTCAAGAACACGAGCAGCCAGATCTCGGCGGCGTACACGTCGGACGGGCGGTACGTGG TGTGCCCGAGCGAGGACTCGCACGTCTACCTGTGGCGCGCGGCGCGCGGCGCGCCGGCGG CGGCGGCGGCCATCGGCGGAATCGGCATGAAGCCCAAGACGTGGTGCACCATCCGCTCCT TCGAGAACTTCTACTGCAAGGACGTCTCCGCCGCCGTGCCGTGGCCGCTCGCCCCCTCCT CCGGCGGCGACGGGTCGACCTCCGGCAGCTCGCCGTCGCGGCGGCAGGGCGGCGTGTCGT GCACCGACGACGTGTGCAGCATGCCGGCGAAGAGCGGCGAGCTGGGCAGCGCCGGGACGC CGCTGACGCACTCCGGCCAGCTAGGCTCGCCGGCGCCAGGAGGCGGCAAGGGCGGCGCCG ACGGCAATGCGTGGGGATTGGTGGTGGTGACGGCGAGCTTACAGGGCGAGATTAGGGTTT ATCAAAACTTTGGAATGCCGTTCAGGATAAGAGGCCAGGGTAACCTGTTCTACTGA |
| 3' downstream sequence |
ctactgaacaaatgctgccatgcgtatgaacatttttgatgattttattt..........
|
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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