Oryza glaberrima (Oryza_glaberrima_V1) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Scaffold Oglab11_unplaced091: 1,394-7,758 forward strand.
This transcript has 8 exons, is annotated with 32 domains and features and maps to 31 oligo probes.
This transcript is a product of gene ORGLA11G0212100 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........ggtgagctcgttgagtcagatccggtgatctgtgcgctgttgcggttgcc
| ||||||
| 1 | ORGLA11G0212100.exon1 | 1,394 | 1,977 | 0 | 2 | 584 |
ATGGACGACTTCCAGGGCCTCCTGGCCCGCGACTTTGGGCTGCGCCCGCAGGGGAAGGCG GCGCCCATGTCGGCCGCCCGCGCCGCCTCGTCCTCCGGATCCGCCTGGTCCAACTCCAGA TCCGCGTCGGCGTCCGCCGCCGCCGCCGCCACCGCCCCGCCCGCGCCCTCGTACGATGAC CTCTTCGGGGCCGCGCCGCCCTCCGCCCCGCCGCCCAAGGCCGCGCCCTCGCCCTCCCTC GACGCCATCTTTGACTCCTTCAAGGAGCCCTCCGCCGCAGATGCCCCACCCAAGCCGAAG CACTCGTCCATGCCGGTGTTTGACAAGCCGGTCTACGATGACGACATCTTCGATGGGGTT CCCGGGGTGAAGAGCAGCTCCTCGGCGCGGTTTGACGATGTATTCGGTGGCAGCCACGCG CCGCCGCCACCTGCGTACGATGATCTGCTTGGGGGATTTGGGAGCAAGCCGGAGGTGAAG GAGGTGCTGCAGGAGGAGAAGAGGAAGCCTGAGCCGGCTGCTTCATCGGCTGGGTTTGAT GATTTGATCCCAGGGTTTGGCGGGAGGATCCCGATGCGTGCCAG |
| Intron 1-2 | 1,978 | 2,828 | 851 |
gtgagcacacctttttgcatgggaa..........cctcatccttttttttgaatcatag
| |||
| 2 | ORGLA11G0212100.exon2 | 2,829 | 4,377 | 2 | 0 | 1,549 |
GGAGACCGTTGGAACTAAAGATAAGAATGCGTCCATGTCAATGTCTAAGCCAGCTAGCAT GGCAAGTGACCCATTTGATGTTCTTGGTACAACTTCAACCTCAAAGCATACATCTTCAGG GATATTCACGGATCCCTTGGATGAACTGGGCAGGCCTGCAAAATCTCAAGGGAAAAAACA TGATAATACTGCTGTTGACAGTGGCCTATTCGAGGACTCAAGCACTTTTAATCAGGTCCC AAAATCAGAACCTCTGTTTACCTCAGAGTTGAATGATGACTTGAAAGATAGGAATGGCTC CACCAAAGACCGAGATTCAAGTCCTGTGCAAAATTTTTCCAGAAAAAATACAACCCAAAA ACCTTCTGTGGAGAACTTCGAAAATATCTTTCCTAAGTCACAGTCTGCTCGATATTCTGA TGTTCATGTTGACATTGGTGCCTCTGGTTCAGAGAAATACAGTGGGAATGGTATGGATGA CCAGTCTCCAAGATCTGATGAGTCCGAAGATGAGATCTGGCTTACAGTTTCTGAGATTCC CCTCTTCACACAGCCAACTAGTGCCCCACCACCTTCAAGAACACCACCACCTCTTGCTGT TAAGCAAAAACCACATGGATCACAAGCAAAAAGAAAAGATGACAATTATCCACGCCGGTC TAACCAAAACCATAATCATCACAGAAGCTCGTCAAATCAAGCTGGTTCTTCTTCAATAGA TGAACTGGAAGATTTTGCCATGGGCAAGTCTCAAAGTTCTGCCTATGACAATGCAAATCC TTTTAATGAGGAAGAATTTGAGCATAGTTCATCAGCAGCAGCATCTGCAGCTGCTATGAA GGAAGCAATGGATAAAGCTGAGGCAAAGTTCAAGCATGCGAAGGTTGTACGGGAAAGGGA ACGCGATGCAAAACTTAGAAATAGAGAACAGCAGGAACAAGATGATGAAGCAAGGTTCAA CACCCAGGATCATGAAGAGAGAGATAGGCAGGAAAGACTAGAACGGGAGAGAGAGATGAG ACAAAGGGAGGAAAAGGAGAAAGAGCAAAGAAGACTTGAAGAGGAGAGGGAACTTGAGAA ACAGAGAGAAAGAGAGAGGGCTGCTAGGCAAGCTGTGGAAAGGGCTACAAAGGAAGCACG GGAAAGAGCAGCTGCAGAAGCACGTGCAAAAGCAGAGAGGGAGGCACGCCAGCGTGCAGA GCGGGCTGCTGTTCAAAGAGCTCAAAAGGAAGCACGTGAGAGGGCTGCTGTAGACGCTAG GGAACGAGCCGAGAGGGCAGCTGCTGAAGCGAAAGAGAGGGCTGCTGCTGAAGCCAAGGA GAAGGTTGCAACTCAAGCCAGGGATAGGGCTGCAGCAGAAAGAGCTGCAGTGGAGAGAGC TCAACAAGAAGCAAGGAGGAGAGCTGAAAGAGCAGCAGTAGAGAGGGCTGCTTCTGAGGC TCGGGAACGTCAAGCTGCTGAGGCTCGAGAAAGGCAGGCTGCTGCTGCTGCAGCAGCAGC TGCAGCAAAAGAAAACAGAGTAAACCGGACGATCTTGAGTCTTTCTTTG |
| Intron 2-3 | 4,378 | 4,512 | 135 |
gtatgggagctcgagccaatagtgc..........gttttaccaactgtggacgtttcag
| |||
| 3 | ORGLA11G0212100.exon3 | 4,513 | 4,633 | 0 | 1 | 121 |
GATTCGATGTTCAATTCTCAAACTCAAAATAGAGGGGCAGCATCTTCTGCTTCAGCATCT ATGAGGAAGGCATCATCAACAACAAATATTGCAGATGACCTATCTGCAATATTTGGAGGA G |
| Intron 3-4 | 4,634 | 4,728 | 95 |
gtacggatcaacccaaatgcagcag..........atttggttgatttcttttcttttag
| |||
| 4 | ORGLA11G0212100.exon4 | 4,729 | 4,826 | 1 | 0 | 98 |
CTCCCACATCATCTGAAGAATTTCAAGAAATTGAAGGAGAGAGTGAAGAAAGAAGACGTG CTAGGTTCGAACGGCATCAAAGGACCCGTGAACGAGCG |
| Intron 4-5 | 4,827 | 5,018 | 192 |
gtaatgttgctaatgattttagtaa..........tttattaacttcaccgtgtatgcag
| |||
| 5 | ORGLA11G0212100.exon5 | 5,019 | 5,084 | 0 | 0 | 66 |
GCAAAAGCCCTGGCTGAAAAGAATGAACGGGATATGCAGGTTCAAAGGGAGCAGGCTGAA AGACAT |
| Intron 5-6 | 5,085 | 5,993 | 909 |
gtaagtattttttatctttcaattg..........tttgtttcgttatctgttaatccag
| |||
| 6 | ORGLA11G0212100.exon6 | 5,994 | 6,083 | 0 | 0 | 90 |
AGAATTTCAGAAACAATGGACTTTGAGATTAAGCGATGGGCTGCTGGAAAAGAAGGCAAT TTGCGTGCATTGCTATCAACTTTGCAATAT |
| Intron 6-7 | 6,084 | 6,743 | 660 |
gtaagtccttattcttgatgctgct..........ttattaattctgttctttctgacag
| |||
| 7 | ORGLA11G0212100.exon7 | 6,744 | 6,920 | 0 | 0 | 177 |
GTACTTTGGCCAGAATGTGGATGGCAACCTGTATCCCTGACTGACTTGATTACTGCTGCT GCGGTTAAAAAAGTATATAGAAAGGCAACATTGTGCATACATCCTGACAAGGTGCAGCAA AAGGGGGCAAATCTACAGCAGAAATATGTTGCCGAGAAGGTGTTTGATCTCCTTAAG |
| Intron 7-8 | 6,921 | 7,719 | 799 |
gtgtgtatgctgccaaaatatattc..........cctcctctatgtttgcacaaaacag
| |||
| 8 | ORGLA11G0212100.exon8 | 7,720 | 7,758 | 0 | 0 | 39 |
GAGGCATGGAACAAATTCAACTCAGAGGAACTCTTCTAA
|
| 3' downstream sequence |
acggcctgcgcaaatgaaacatattgctcaccaatcttcacctgcatgag..........
|
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Ensembl Plants release 60 - October 2024 © EMBL-EBI EMBL-EBI
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