Oryza glaberrima (Oryza_glaberrima_V1) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 9: 15,589,123-15,592,189 forward strand.
This transcript has 7 exons, is annotated with 15 domains and features, is associated with 17 variant alleles and maps to 28 oligo probes.
This transcript is a product of gene ORGLA09G0139100 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncc
| ||||||
| 1 | ORGLA09G0139100.1.exon1 | 15,589,123 | 15,589,305 | 0 | 0 | 183 |
GGCGCCGACGCGAGCCCCGCCACGAATCCGGCCCCGCCAGCTGCCGCCGTGGCCGTCGCC GCTGCGGCCGCGGACGCCGGAGGGGACGACGACGTGGCCGCGGCCGCGGAGGCGCGGCGG CCGTTCACGGCGCTCAGCCAGGTCGACGCCGACCTCGCCCTGGCCCGCGTGCTCCAGGAG CAG |
| Intron 1-2 | 15,589,306 | 15,589,403 | 98 |
gtatatgtgggggagatctcgcggt..........tggttgttgtttggatcggctgcag
| |||
| 2 | ORGLA09G0139100.1.exon2 | 15,589,404 | 15,589,782 | 0 | 1 | 379 |
GAGCGGGCGTACATGATGCTTCGCATGGGCGGAGGCGTCGGCGAGGGCAGCGATTACGGG AGCTCGGATGCCGGGAGCTACGAGTACGACGACGAGGCCGAGGAGGACTACGAGGAGGAG CTGGAGCACCACCTCCGCGTCCACCACCACGAGCACGCCGTTGGGGAGGGTCGTGGCGAG GGAGAGCGAGATGGGGAGGGGGCTGAGGGAAGCGAGTTGGAGGAGGAGGGGTTCGACGAG GAGTATGATGAGGAGGAAGTCGAGCCAGAGCTAGACCCCGCGGAGTACGAGGACGATGAG GCTTATGCACGAGCTCTGCAGGACGCCGAGGAGCGCGAAGTAGCCGCGCGACTTATGGCT CTCGCGGGGATCAGCGATT |
| Intron 2-3 | 15,589,783 | 15,589,871 | 89 |
gtgagtagaaaaggagtgctgtttc..........atttcaatttgatattgctttgtag
| |||
| 3 | ORGLA09G0139100.1.exon3 | 15,589,872 | 15,589,915 | 1 | 0 | 44 |
GGAGACCTGTGGAGCCTGTAGAGGAGCATGCTAATGATCCACAG
|
| Intron 3-4 | 15,589,916 | 15,590,653 | 738 |
gtaatggtctatttttcttgttagt..........ttgatatatttttacctaaacccag
| |||
| 4 | ORGLA09G0139100.1.exon4 | 15,590,654 | 15,590,695 | 0 | 0 | 42 |
GATGCGTGGCAAGAGGTTGACCCAGATGAGTATTCTTATGAG
|
| Intron 4-5 | 15,590,696 | 15,590,790 | 95 |
gcaagtttcattgttatatgttagc..........aatggttctctctatatgacttcag
| |||
| 5 | ORGLA09G0139100.1.exon5 | 15,590,791 | 15,590,912 | 0 | 2 | 122 |
GAATTAGTTGCATTGGGAGAAGCGGTTGGTACAGGACACAGAGGCCTCTCTGCTGCTACA CTTGCTTCTCTACCTTCAGTAACTTACAAGGCAGAAGGTGTCCAAGATGGCAACACAGAG CA |
| Intron 5-6 | 15,590,913 | 15,591,000 | 88 |
gtatgtgtgaataatttgtctcata..........gtcctaatgtatctattgttgttag
| |||
| 6 | ORGLA09G0139100.1.exon6 | 15,591,001 | 15,591,109 | 2 | 0 | 109 |
ATGTGTTATTTGTCGTGTGGAATTTGAGGATGGTGAATCTTTGATTGCACTCCCCTGCAA GCATTCATACCATCCTGAGTGCATAAACCAATGGCTTCAAATAAATAAG |
| Intron 6-7 | 15,591,110 | 15,592,135 | 1,026 |
gtaaatatcatttccagatctatac..........gtgacgaaatatccttgatgtgcag
| |||
| 7 | ORGLA09G0139100.1.exon7 | 15,592,136 | 15,592,189 | 0 | 0 | 54 |
GTTTGCCCGATGTGCAGCGCGGAAGTTTCCACATCGGACAACAACCAGGCATGA
|
| 3' downstream sequence |
ccaatctttgctgccattatggggcttgatgggagcaaatagcgggcatc..........
|
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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