Oryza glaberrima (Oryza_glaberrima_V1)
Location
About this transcript

This transcript has 1 exon, is annotated with 22 domains and features, is associated with 17 variant alleles and maps to 34 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ORGLA08G0193900.11806601aa
 
Protein coding
I1QKI8 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........gcgagagacatctactagtctagtccctatcactccactccactccacca
1ORGLA08G0193900.1.exon120,278,85620,277,051001,806
CCAAACCCAAACCCTCACCAATGGCGTCTCCGCCGCCGCCGCCTCGCCTCCTCACTCCCA
AGCCCGACCCCCGACGCCCCCCTACCCCCGCTCCCTTACCCCGACCCCAACCTCGCCCAA
AGCATGCTCTTCTCCGCCCAGTCCCCGCAGGCGCAGCCGCAGGCGCCGCCACCCCACATC
CAACCCCCCGCCTCCGTCTCCGCCGAGGCCCCCTCTGGCGACGAGAAGAATAAGAAGAAG
AAGAAGCGGGCCCGCGCCTCCCAGGAGATGGTGCGCATCACCAACCTTAGCATCGCCGAC
CACCTCCACTACCGCTCCCTCGTCCGCCGCGCCCGCCTCACCTTCGAGGCCCTCCGCGCC
ATCTACCAACGCCAGGACCTCGCCACCGCCGGGGGAATCCGCAACCGCTTCGACCTCCGG
GCCTCCAGCAAGATGCTCTCCAAGGGCCTCTGGATGCACCGCGACATCCGCACCGTCGGC
TCCATCCCCGGCCTCCTCGTCGGGGACTCCTTCTTCTACCGCGCCGAGCTCTGCGTCCTC
GGCCTCCACACCGCCCCTCAGGCCGGCATCGGCTACATCCCCGCCAGCATCGTCGACCAG
GGCCACCCCGTCGCCACCAGCATCGTCTCCTCCGGGGGATACCTCGACGACGAGGACAGC
GGCGACGTCCTCGTCTACTCCGGCAGCGGCGGCCGCCTGCGCAACCGCCTCGACCACAGT
GCCGACCAGACGCTCCAGCGCGGCAACCTCGCGCTCCACTACAGCTGCCACTACGGCATC
GAGGTGCGCGTCATCCGTGGCCACGCCTGCGACCACAGCCCCAGCAGCAAGGTCTACGTC
TACGACGGCCTCTACAGGGTTGTCACCTCCACCTTCGGCCCCGGCAAATCCGGCCGCGAC
GTCTGCAAGTTCAAGCTCGTGCGCATCCCTGGCCAGGACGACCTCGGCAGCAAGGCCTGG
CACACCGCAGCGGAGCTCAAGGATGCACTGGATTCCAAGATCCGCCCGCCCAAGTACATC
TCGCTCGACATTGCCAAGGGCAAGGAACCATTCCGCGTGCCCCTATATAACAAGCTCGAC
GACGACAGGTCACCCCTCTTCTACGACTACATTGCCTGTCCCGACTTCCCCACCACCCAG
CAGCTGCTCAAACGCCAGACCCAGAGGGGCTGCCACTGTGCCGAGCTGTGCGGCTCCAGG
TGCAGCTGTGAGAGGAAGAACAGGGGGGCCGACGGCCCTGTGTACACCTCCGATGGCATC
CTTCTCAGGGGACGCCCCTTGGTGTACGAGTGCGGACCCCTGTGTGGATGCCCCATGACC
TGCCCCAACAGAGTCACACAGCAAGGGATGAAGCACCGCCTCGAGGTGTTCCGTTCCAAG
GAGACAGGCTGGGGTGTCAGGACGCTTGACTTGATACAGCCGGGTGCCTTCATATGCGAG
TACGCCGGCGACGTGCTCTCCTTGGACAGCCACTCAGGTGACGCCCCTCTGCCTCCGATG
GAGGACGGGAGCTCCATCATCGACCCGACCAAGTTCCCCGAGAGATGGAGGGAGTGGGGA
GATGCATCCGTGGTTTACCCGGACAGGGTACCCCATTTCCCCCTATTTGCAGGGGCGCGC
TACCGACTCGACGTGTCACAGAGGAGGAACGTGGCTTGCTACATTAGCCACAGCTGCAGT
CCGAATGTGTTCCTTCAATATGTAATCCGTGGCAATGAGGATGAATCCTACCCTCACATG
ATGGTGTTTGCCATGGAGACCATCCCTCCAATGCGGGATCTGTCCATCGACTATGGCTTG
GACTAG                                                      
3' downstream sequence
ggtccatgaggggggaggagggatcaatggctggtaactggttttggcgg..........