Oryza glaberrima (Oryza_glaberrima_V1)
Description

Non-specific serine/threonine protein kinase [Source:UniProtKB/TrEMBL;Acc:I1QJL0]

Location
About this transcript

This transcript has 10 exons, is annotated with 18 domains and features, is associated with 142 variant alleles and maps to 54 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ORGLA08G0161100.11530509aa
 
Protein coding
I1QJL0 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........gtttgtggaatgctagaccttagttgttttcttttatattgccagtgaaa
1ORGLA08G0161100.1.exon117,846,10817,846,29101184
ATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGAACTACAATCTAGGA
AGAACTTTAGGTATTGGTTCATTTGGAAAAGTGAAGATTGCAGAGCATAAGCTTACAGGG
CACAGAGTTGCTATAAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAG
AAAG                                                        
 Intron 1-217,846,29217,846,646355
gtaccttccttttataaagagacca..........ttttcttattgtttcttgtttacag
2ORGLA08G0161100.1.exon217,846,64717,846,83110185
CAAAGAGAGAAATCAAGATATTGAGGTTGTTCATTCATCCCCATATCATTCGCCTTTATG
AGGTCATATACACTCCTACGGATATATATGTTGTGATGGAGTACTGCAAGTTTGGAGAAC
TGTTTGATTACATTGTTGAGAAAGGCAGGTTGCAGGAAGATGAGGCTCGCCGAATCTTCC
AGCAG                                                       
 Intron 2-317,846,83217,847,269438
gtacttgaccttactcatttctttc..........tagaaggtaaaattttatggaacag
3ORGLA08G0161100.1.exon317,847,27017,847,45200183
ATTATATCTGGGGTTGAATACTGCCACAGAAACATGGTGGTTCATCGTGATCTGAAGCCA
GAAAACTTGCTACTGGATTCAAAGTATAACGTAAAGCTTGCTGACTTTGGTTTGAGTAAT
GTCATGCATGATGGCCATTTTTTAAAGACAAGCTGCGGGAGTCCGAATTATGCTGCTCCA
GAG                                                         
 Intron 3-417,847,45317,847,54290
gtattttttttgtatcactgtgaga..........ttatagtattatggtccctttgcag
4ORGLA08G0161100.1.exon417,847,54317,847,67400132
GTGATCTCTGGTAAATTATATGCTGGACCCGAGGTTGATGTATGGAGCTGTGGAGTGATC
CTTTATGCTCTCCTTTGTGGTACTCTTCCATTTGATGACGAGAATATCCCCAACCTATTC
AAAAAGATAAAG                                                
 Intron 4-517,847,67517,847,804130
gtgagataaatttatgtaggctagc..........ttgacctgcttgtttggtgttccag
5ORGLA08G0161100.1.exon517,847,80517,847,99000186
GGTGGTATATATACTCTCCCAAGTCATTTATCTGCTCTGGCCAGGGATTTGATCCCAAGG
ATGCTTGTTGTTGATCCAATGAAGAGAATCACAATTCGTGAAATTCGAGAGCATCAATGG
TTTCAGATTCGCCTTCCTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCC
AAAATG                                                      
 Intron 5-617,847,99117,848,331341
gtacttcctttgtgtcacattctta..........tcttgatatatgaccttctttgaag
6ORGLA08G0161100.1.exon617,848,33217,848,4210090
ATTGATGAAGATACCCTTCAAGACGTTGTAAACTTGGGTTATGAAAAGGACCATGTGTGT
GAATCTCTGCGCAATAGACTGCAAAATGAG                              
 Intron 6-717,848,42217,848,49069
gtatatgcaagcaaatgaactgttc..........ttgctgattttagaccattttccag
7ORGLA08G0161100.1.exon717,848,49117,848,5740084
GCAACTGTTGCATATTATTTGCTATTGGACAATCGATTCCGAGCTACCAGTGGCTATCTG
GGAGCAGACTATCAAGAATCATTG                                    
 Intron 7-817,848,57517,848,65480
gttagttcaaatttacaccattttt..........actgtctgaccttacggttcattag
8ORGLA08G0161100.1.exon817,848,65517,848,79500141
GAGAGGAATCTTAATCGCTTTGCTTCATCAGAATCAGCAAGTTCAAATACAAGGCATTAT
CTCCCAGGAAGCAGTGATCCTCATGCCAGTGGTTTGCGCCCACATTATCCTGTTGAAAGA
AAATGGGCTCTTGGACTTCAG                                       
 Intron 8-917,848,79617,848,87479
gtcttgcatgatgttctcttttact..........ctgacgtatatcacttatccaacag
9ORGLA08G0161100.1.exon917,848,87517,849,10500231
TCTCGAGCTCAGCCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTGAAGACTTAAAT
GTCTGCTGGAAGAAGAATGGACAGTACAACATGAAGTGCAGATGGAGCGTTGGGTATCCT
CAGGCCACTGATATGTTAGATGTCAACCACAGCTTTGTTGATGACTCAATTATAATGGAT
AATGGCGATGTAAACGGGAGGTTACCTGCTGTGATCAAGTTTGAAATCCAG         
 Intron 9-1017,849,10617,849,482377
gtgtgcaatttcaaattctagcact..........tactgattccgtttcttttcttcag
10ORGLA08G0161100.1.exon1017,849,48317,849,59600114
CTTTACAAGAGCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTATGGGGCCTCAG
CTCCTTTTCCTGGACTTCTGTGCAGCCTTCCTTACCAAGCTGAGGGTTCTATAG      
3' downstream sequence
taccccgtgttggcttcagtgaataaccaaacctagggttttatcatgtg..........