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Oryza glaberrima (Oryza_glaberrima_V1)
Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:I1QC03]

Location
About this transcript

This transcript has 13 exons, is annotated with 15 domains and features, is associated with 7 variant alleles and maps to 38 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ORGLA07G0164500.12097698aa
 
Protein coding
I1QC03 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........gtctcgcctccacttccgacttccgagtcgtctcgcctcgccggcgcagg
1ORGLA07G0164500.1.exon117,594,64317,594,81202170
ATGGCGGCGGCGACGACCGCCGCGCCGGCGGCGGCGGCGGCGAGGGTGGGGCTGCTGTAC
GACGAGAGGATGTGCGCGCACGCGACGCCCGACGGGGAGGAGCACCCGGAGAACCCCGAG
AGGCTGCGGGCCATCTGGCGCAAGCTCTCCGCCGACGGCGTCGCCTCCAG          
 Intron 1-217,594,81317,595,367555
gtatacgtatacccccaccccccgc..........gtaatgtagcatagttttctcccag
2ORGLA07G0164500.1.exon217,595,36817,595,56920202
GTGCATGATCATGAAAGCGAAGGAAGCTGAGGACAAGTATATAGCTTCTGTCCATAGCCA
GAACCATATCAAGCTGATGAGGAGTATCAGCTCAAAAGAATATGATTCCCGTCGAAACAA
GATTGCTAGAAAATTGAATTCCATTTACTTCAACAAGGGCTCCTCAGAGTCTGCTTTTCT
TGCAGCTGGTTCTGTGATTGAG                                      
 Intron 2-317,595,57017,595,66798
gtgattcaacatttgacatgaacat..........aataatcaactcatttggcaaatag
3ORGLA07G0164500.1.exon317,595,66817,595,81400147
GTAGCTGAGAAGGTTGCTGCAGGAGAGTTAAGTTCTGCTATTGCTCTAGTCCGACCTCCA
GGTCACCATGCTGAACATAATGAGGCAATGGGTTTTTGCCTCTTCAACAATGTAGCAATT
GCTGCTGATTATCTCTTAAATGAGAGG                                 
 Intron 3-417,595,81517,595,969155
gtatgttgttgaaacttgcctattt..........ttcctatttgccttttttgttgcag
4ORGLA07G0164500.1.exon417,595,97017,596,08202113
ACTGACTTAGGTATCAAGAAGATATTGATTGTCGATTGGGATGTTCATCATGGAAATGGC
ACACAAAAGATGTTTTATAGTGATCCTCGTGTATTGTTCTTTTCAGTTCACAG       
 Intron 4-517,596,08317,596,717635
gtatggcagcctcttgacatggact..........cttgtgtcctatgtttcttttgtag
5ORGLA07G0164500.1.exon517,596,71817,596,92921212
ATTTGATTATGGCAGCTTCTATCCTGCTGAAGGGGATGCATCTTACTGTTTCATTGGGGA
AGGAGATGGTAAAGGGTACAACATTAACGTGCCCTGGGAACATGGAAAATGTGGTGATGC
AGATTATATTGCTGCATGGGACCATGTACTACTTCCTGTTGCTGAAGCATTTAACCCTGA
TATAGTCTTGGTGTCTGCTGGGTTTGATGCAG                            
 Intron 5-617,596,93017,597,330401
gtatatagtttaaaagttcgtagaa..........ttctctacattgatattttgggtag
6ORGLA07G0164500.1.exon617,597,33117,597,3951065
CACTGGGTGATCCTCTTGGTGGCTGCTGCATCACTCCCAATGGATATGCTCTGCTACTGA
CAAAG                                                       
 Intron 6-717,597,39617,597,713318
gtaagcacttgcagaaaaataacat..........ttaattctgtatgtaaaacctgcag
7ORGLA07G0164500.1.exon717,597,71417,597,88400171
CTCTTAGGTTTTGCCCAAGGGAGGATAGTGATGGCTCTTGAAGGAGGCTATAACCTTAGA
TCCATAGCAAATTCAGTTAGTGCTTGTGCTAAAGTTTTGTTGGGAGACAAGTTCAGATTT
GACACTCCTGATATGCAACCGTTTGAATCTTCATGGAGAGTTATACAAGCG         
 Intron 7-817,597,88517,597,97086
gtaatggtctgcttacattaattgc..........ttccttcccccacaccactgaccag
8ORGLA07G0164500.1.exon817,597,97117,598,0600090
GTACGTGATGAATTGAAGACGTTCTGGCCTGTTCTGAGTAATAGATTGCCAGAGAATATA
TCATTGAGGAGTAGGCCCTCACAAATTGAG                              
 Intron 8-917,598,06117,598,675615
gtagatacttatttttcttatctta..........ttccccccacttttggtatgatcag
9ORGLA07G0164500.1.exon917,598,67617,599,02000345
CTGTATTCTTCTGGTTCTGACTCTGAAGTTGAAGATCTCCCTGATGCTATTGCTTCTGTC
AATATTATTCAAATTACTGATGGTATTATAAGTGAAAGCTTCTCAAAGTTGAACCTTGAT
GAAGACAAAATCGCAACAAAGACCACCTCAAGTAATGTAATGGTTGAAGGTCCAACTGAT
TCAGTTGAACCACAAAATGATGGATCTGCTGCGGTGTCAACTGAAGGAATATCATCTCTA
TCTTCTACTTGGAGATCAGATCTGTCAAAAGTATATGTTTGGTATGCCAGCTTTGGTTCA
AACATGTGGACACCAAGGTTTCTGTGCTACATCCAAGGGGGAAAG               
 Intron 9-1017,599,02117,599,11292
gtaaagtgaaaacgtattctcctag..........cgctatttattttaatgttggacag
10ORGLA07G0164500.1.exon1017,599,11317,599,30602194
GCTGAGGGTATGAATATACCATGTTTTGGATCTCATGACACAAGCCCACCAAGAGGTTCC
ATGTGGAAGACTGTGCCTCATAGATTGTTTTTTGGTAGATCCTCTACTCCTTGCTGGGGA
ACTGGTGGTGTTGCTTTTCTCAACCCTGAGATAAACCACACTGAGAATTCCTATGTCTGC
ATGTATAAAATAAC                                              
 Intron 10-1117,599,30717,599,424118
gtatgtatgttgtagcatctgccta..........taatttgcctatcttttttgtacag
11ORGLA07G0164500.1.exon1117,599,42517,599,58120157
GCTCGAGCAGTTCAATGATGTATTGTTTCAAGAGAATCGTTTAGTGAAGGAGAACGGCGA
AAGTGGAAAAACTGAGTCTCCTGACTCTCCTTTGATTGGCTTGTCTGAAATAGAGTTTGT
TTCCAGAAACAAGGGTGTCCACCTTGCACCTATTAAG                       
 Intron 11-1217,599,58217,600,078497
gtttgatttaactgcaacaagcatg..........gatagttgaattatattccctgcag
12ORGLA07G0164500.1.exon1217,600,07917,600,1430265
GATAGCTGGTACTCCAATGTACTTTACCTTGGGGAGGAGGATAACCTTCCAATTCTTACA
ATGAC                                                       
 Intron 12-1317,600,14417,600,298155
gtaagtgtctgtacctttaagttcc..........acgaagtgtttctttctctctgcag
13ORGLA07G0164500.1.exon1317,600,29917,600,46420166
ATGCCCGTCATCAGACGTAGAGCGATGCAGATCCGGAGAGCTGCCATTGTGTCCTCCATC
CAAGACCTACTCCGCCACCCTGATAAGGGGGCTAATGGAAGGGAAGCACCTGGATGCAGA
TGCGGCCGCTAGTTACATCAACACTGCAGCTACCAGAGGCCTGTGA              
3' downstream sequence
aggctgcttccctatgcattatggtttgtagttttgcactaagcatgtaa..........