We need your help! Has Ensembl saved you time or effort? Please take 15 minutes to fill in a survey and help EMBL-EBI make the case for why open data resources are critical to life science research.
https://www.surveymonkey.com/r/QGFMBH8?channel=[webpage]

Oryza glaberrima (Oryza_glaberrima_V1)
Description

histone deacetylase 15 [Source:Projected from Arabidopsis thaliana (AT3G18520) TAIR;Acc:AT3G18520]

Location
About this transcript

This transcript has 16 exons, is annotated with 18 domains and features, is associated with 102 variant alleles and maps to 54 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ORGLA07G0034700.11872623aa
 
Protein coding
I1Q8A5 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
Markup
  • loading
Show/hide columns
  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........ctatgctgatctttgtcgtatcacaattacagattgcgttgcatgctctg
1ORGLA07G0034700.1.exon13,116,8713,116,37100501
ATGGCGTCTGATATGAGGTCACTCAACAGCCAAAAGGGACAGAGTTGTGGAGTTTCAGAC
CAAGCTTGCCACAGCAAAAGCAAAAGCGGCAATGATGGAAAACCATCACATGCTAAAGCA
AATGGAGTTTCCTCGTTGAGCGGGAGTCATAATGATGAGAAAATTTTGAAAGAGAACTCT
GGAGCATGCAATTTAAATTCCGACCATGCCAATCCTTTATCAGTAGATGGGACCAAAGTT
TCTACAGCAAGGTCGGAACTTATTGACAGTTCAGGTCATGATGGTTGTCTGCATGTCAAG
AATGAAAGCTGTATGGCTTGTGATGATCTGCTTCAAGAGTCTGACAAAGAACAGCCTGGG
GGTACACTGGAGGATCTATTTTCCTTTAATGATGAAGAGGATGATGACAGTGACTGGGAA
CCCTCTGCTCGCCTTGCTTTGAGCAGGTGGTTTTGCTTGAACTGTACAGTGCCAAACATG
GAGGGGTTTACACATTGTCAG                                       
 Intron 1-23,116,3703,116,247124
gtaaaggttattactttgtcagtgt..........cttgatgtttattctcatactctag
2ORGLA07G0034700.1.exon23,116,2463,116,1560191
AATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAAGCTCATCTT
GCACAGGCAGCTTTGTTATCTGCTGACGCAG                             
 Intron 2-33,116,1553,115,990166
gtgcttctttacattctttactcag..........gtcacaatctcactattttatgcag
3ORGLA07G0034700.1.exon33,115,9893,115,9311059
CGCTGCCATCAGTATCTACAGCTGTCGGTTTTGATGAAAGAATGTTGCTCCATAGTGAG 
 Intron 3-43,115,9303,115,401530
gtaagcaatgaacttccgattatgt..........tatctcacatttcctatgttatcag
4ORGLA07G0034700.1.exon43,115,4003,115,3250176
ATAGAGATTAAACCAAATCCACATCCAGAAAGGCCTGACCGCCTTCGTGCAATTGCTGCC
AGTCTTGCTTCTGCAG                                            
 Intron 4-53,115,3243,114,741584
gtactctatcattaactttgagata..........ttaactcatatttccaatatctcag
5ORGLA07G0034700.1.exon53,114,7403,114,6761065
GTATCTTCCCTTCAAAATGTGTCATGGTACCTCCTCGAGAAATCACTAAGGAAGAACTCC
TAAGG                                                       
 Intron 5-63,114,6753,114,559117
gtatgtaagagtttggcatgttaat..........ctttcaaaatcgtgcttacttctag
6ORGLA07G0034700.1.exon63,114,5583,114,5030256
GTCCATACTTCAGATCACATTGACAGTGTTGAGCAGACAAAGAACATGCTTTACAG    
 Intron 6-73,114,5023,114,322181
gtactatgtttattccatacttaaa..........acgtcattttgggatcaatttgtag
7ORGLA07G0034700.1.exon73,114,3213,114,19820124
TTACTTCACTTCAGATACCTATGCAAATGGACACTCAGCATGTGCTGCCAAACTTGCAGC
AGGGATATGTGCTGATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGC
AATG                                                        
 Intron 7-83,114,1973,114,071127
gtactgtgcatatcatcttatattt..........actgactgtgtctactggagagcag
8ORGLA07G0034700.1.exon83,114,0703,113,94500126
GTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGTCTTCACAAT
AACGCAGCAGTGGCTGCATTAGCTGCACAAAGAGCTGGTGCCAAGAAAGTCTTAATAGTT
GACTGG                                                      
 Intron 8-93,113,9443,113,812133
gtaatgctagttacaagtttgcatt..........cagtggtgctcaattgttgttgcag
9ORGLA07G0034700.1.exon93,113,8113,113,7610051
GATGTCCACCATGGCAATGGAACACAGGAGATATTTGATGGGGACAATTCT         
 Intron 9-103,113,7603,113,623138
gtgagttatcatcttccttttgtgt..........ataagtttttttcttcttctttcag
10ORGLA07G0034700.1.exon103,113,6223,113,5540069
GTCTTGTACATATCATTACATCGGCATGAGGATGGAAGCTTCTACCCTGGAACTGGGGCA
GCACATGAG                                                   
 Intron 10-113,113,5533,113,318236
gtgattttctttaacatttgaagat..........atttcttgcatgggcatcacttcag
11ORGLA07G0034700.1.exon113,113,3173,113,20901109
GTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGTGGTGGTGTT
GGAGACAATGACTACATATTTGCTTTTAAGCATGTGGTGCTTCCGATAG           
 Intron 11-123,113,2083,112,362847
gtaataattgaataggggcatttgc..........aatgaattttctttcatgaatgcag
12ORGLA07G0034700.1.exon123,112,3613,112,2821080
CTGCAGAATTTGCTCCAGACATCACCATCATATCTGCAGGATTTGATGCAGCGAGGGGTG
ACCCTCTGGGTTGTTGTGAT                                        
 Intron 12-133,112,2813,111,647635
gtaagttcgtaagactaacacatga..........gaccaacttcctctttaattaatag
13ORGLA07G0034700.1.exon133,111,6463,111,5640283
GTCACTCCTGCTGGATATTCTAGGATGGCGTCCATGCTAACTGCTTGTTCACAGGGAAAA
TTGTTGGTTATACTTGAGGGAGG                                     
 Intron 13-143,111,5633,111,278286
gtaggtacccagatgttctatcaat..........ttcgtcttgcctacctttggtgcag
14ORGLA07G0034700.1.exon143,111,2773,111,2322046
ATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAG              
 Intron 14-153,111,2313,110,736496
gtatgcattcttcacaataacatct..........tcttgatgatatttgacacttgcag
15ORGLA07G0034700.1.exon153,110,7353,110,56701169
GTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCAGAGGAGGGC
ATACAGACTGTCTTACAAGTCCTGAGTATCCAGCAGCAATTTTGGCCAGTTTTAGTCCCA
TCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA           
 Intron 15-163,110,5663,109,4771,090
gtgagtgacaaaagtgcaatcaaca..........taatctctttttttgcgatgtgtag
16ORGLA07G0034700.1.exon163,109,4763,109,31010167
CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTTCTGGTGGA
AATGGGGGAGTAAAAGGCTACTGTACGAAGTGCTATTTGAGGGCCGCTGTCTGAGGAAAA
CCAAGGATACAGGCAAAGAAAAATTGAATGATGAAGCAGAGCCCTAA             
3' downstream sequence
atgtgttgctgctgaagcctgactgctgatctcatcaacatccatagtgt..........