Oryza glaberrima (Oryza_glaberrima_V1)
Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:I1QC03]

About this transcript

This transcript has 13 exons, is annotated with 15 domains and features and maps to 38 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ORGLA06G0264700.12097698aa
 
Protein coding
I1QC03 Ensembl Canonical
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........gtctcgcctccacttccgacttccgagtcgtctcgcctcgccggcgcagg
1ORGLA06G0264700.exon17,1086,93902170
ATGGCGGCGGCGACGACCGCCGCGCCGGCGGCGGCGGCGGCGAGGGTGGGGCTGCTGTAC
GACGAGAGGATGTGCGCGCACGCGACGCCCGACGGGGAGGAGCACCCGGAGAACCCCGAG
AGGCTGCGGGCCATCTGGCGCAAGCTCTCCGCCGACGGCGTCGCCTCCAG          
 Intron 1-26,9386,383556
gtatacgtatacccccaccccccgc..........gtaatgtagcatagttttctcccag
2ORGLA06G0264700.exon26,3826,18120202
GTGCATGATCATGAAAGCGAAGGAAGCTGAGGACAAGTATATAGCTTCTGTCCATAGCCA
GAACCATATCAAGCTGATGAGGAGTATCAGCTCAAAAGAATATGATTCCCGTCGAAACAA
GATTGCTAGAAAATTGAATTCCATTTACTTCAACAAGGGCTCCTCAGAGTCTGCTTTTCT
TGCAGCTGGTTCTGTGATTGAG                                      
 Intron 2-36,1806,08398
gtgattcaacatttgacatgaacat..........aataatcaactcatttggcaaatag
3ORGLA06G0264700.exon36,0825,93600147
GTAGCTGAGAAGGTTGCTGCAGGAGAGTTAAGTTCTGCTATTGCTCTAGTCCGACCTCCA
GGTCACCATGCTGAACATAATGAGGCAATGGGTTTTTGCCTCTTCAACAATGTAGCAATT
GCTGCTGATTATCTCTTAAATGAGAGG                                 
 Intron 3-45,9355,780156
gtatgttgttgaaacttgcctattt..........ttcctatttgccttttttgttgcag
4ORGLA06G0264700.exon45,7795,66702113
ACTGACTTAGGTATCAAGAAGATATTGATTGTCGATTGGGATGTTCATCATGGAAATGGC
ACACAAAAGATGTTTTATAGTGATCCTCGTGTATTGTTCTTTTCAGTTCACAG       
 Intron 4-55,6665,032635
gtatggcagcctcttgacatggact..........cttgtgtcctatgtttcttttgtag
5ORGLA06G0264700.exon55,0314,82021212
ATTTGATTATGGCAGCTTCTATCCTGCTGAAGGGGATGCATCTTACTGTTTCATTGGGGA
AGGAGATGGTAAAGGGTACAACATTAACGTGCCCTGGGAACATGGAAAATGTGGTGATGC
AGATTATATTGCTGCATGGGACCATGTACTACTTCCTGTTGCTGAAGCATTTAACCCTGA
TATAGTCTTGGTGTCTGCTGGGTTTGATGCAG                            
 Intron 5-64,8194,419401
gtatatagtttaaaagttcgtagaa..........ttctctacattgatattttgggtag
6ORGLA06G0264700.exon64,4184,3541065
CACTGGGTGATCCTCTTGGTGGCTGCTGCATCACTCCCAATGGATATGCTCTGCTACTGA
CAAAG                                                       
 Intron 6-74,3534,035319
gtaagcacttgcagaaaaataacat..........ttaattctgtatgtaaaacctgcag
7ORGLA06G0264700.exon74,0343,86400171
CTCTTAGGTTTTGCCCAAGGGAGGATAGTGATGGCTCTTGAAGGAGGCTATAACCTTAGA
TCCATAGCAAATTCAGTTAGTGCTTGTGCTAAAGTTTTGTTGGGAGACAAGTTCAGATTT
GACACTCCTGATATGCAACCGTTTGAATCTTCATGGAGAGTTATACAAGCG         
 Intron 7-83,8633,77886
gtaatggtctgcttacattaattgc..........ttccttcccccacaccactgaccag
8ORGLA06G0264700.exon83,7773,6880090
GTACGTGATGAATTGAAGACGTTCTGGCCTGTTCTGAGTAATAGATTGCCAGAGAATATA
TCATTGAGGAGTAGGCCCTCACAAATTGAG                              
 Intron 8-93,6873,073615
gtagatacttatttttcttatctta..........ttccccccacttttggtatgatcag
9ORGLA06G0264700.exon93,0722,72800345
CTGTATTCTTCTGGTTCTGACTCTGAAGTTGAAGATCTCCCTGATGCTATTGCTTCTGTC
AATATTATTCAAATTACTGATGGTATTATAAGTGAAAGCTTCTCAAAGTTGAACCTTGAT
GAAGACAAAATCGCAACAAAGACCACCTCAAGTAATGTAATGGTTGAAGGTCCAACTGAT
TCAGTTGAACCACAAAATGATGGATCTGCTGCGGTGTCAACTGAAGGAATATCATCTCTA
TCTTCTACTTGGAGATCAGATCTGTCAAAAGTATATGTTTGGTATGCCAGCTTTGGTTCA
AACATGTGGACACCAAGGTTTCTGTGCTACATCCAAGGGGGAAAG               
 Intron 9-102,7272,63692
gtaaagtgaaaacgtattctcctag..........cgctatttattttaatgttggacag
10ORGLA06G0264700.exon102,6352,44202194
GCTGAGGGTATGAATATACCATGTTTTGGATCTCATGACACAAGCCCACCAAGAGGTTCC
ATGTGGAAGACTGTGCCTCATAGATTGTTTTTTGGTAGATCCTCTACTCCTTGCTGGGGA
ACTGGTGGTGTTGCTTTTCTCAACCCTGAGATAAACCACACTGAGAATTCCTATGTCTGC
ATGTATAAAATAAC                                              
 Intron 10-112,4412,324118
gtatgtatgttgtagcatctgccta..........taatttgcctatcttttttgtacag
11ORGLA06G0264700.exon112,3232,16720157
GCTCGAGCAGTTCAATGATGTATTGTTTCAAGAGAATCGTTTAGTGAAGGAGAACGGCGA
AAGTGGAAAAACTGAGTCTCCTGACTCTCCTTTGATTGGCTTGTCTGAAATAGAGTTTGT
TTCCAGAAACAAGGGTGTCCACCTTGCACCTATTAAG                       
 Intron 11-122,1661,670497
gtttgatttaactgcaacaagcatg..........gatagttgaattatattccctgcag
12ORGLA06G0264700.exon121,6691,6050265
GATAGCTGGTACTCCAATGTACTTTACCTTGGGGAGGAGGATAACCTTCCAATTCTTACA
ATGAC                                                       
 Intron 12-131,6041,450155
gtaagtgtctgtacctttaagttcc..........acgaagtgtttctttctctctgcag
13ORGLA06G0264700.exon131,4491,28420166
ATGCCCGTCATCAGACGTAGAGCGATGCAGATCCGGAGAGCTGCCATTGTGTCCTCCATC
CAAGACCTACTCCGCCACCCTGATAAGGGGGCTAATGGAAGGGAAGCACCTGGATGCAGA
TGCGGCCGCTAGTTACATCAACACTGCAGCTACCAGAGGCCTGTGA              
3' downstream sequence
aggctgcttccctatgcattatggtttgtagttttgcactaagcatgtaa..........