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    Oryza glaberrima (Oryza_glaberrima_V1) ▼

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    Transcript: ORGLA01G0098500.1

    Location

    Chromosome 1: 7,553,996-7,556,556 reverse strand.

    About this transcript

    This transcript has 7 exons, is annotated with 19 domains and features, is associated with 71 variant alleles and maps to 37 oligo probes.

    Gene

    This transcript is a product of gene ORGLA01G0098500 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtFlags
    -ORGLA01G0098500.1663220aa
     
    Protein coding
    		I1NM95 Ensembl Canonical

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    Markup
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........accaatcgctagagaggaggaaggttgaggaggaggaggaagaagacgag
    1ORGLA01G0098500.1.exon17,556,5567,556,43700120 
    ATGGAGAGAGATGAGGTGTGCTGTTCTTGCGCCATGAGGCAGTGCAGGATCTGCCATGAG
GAGGAGGAGGAAGGGTGCACCGCCATGGAGTCCCCCTGCGGATGCTCTGGCTCCCTCAAG
     Intron 1-27,556,4367,556,265172 
    gtgattgcttcttcttcttcttctt..........tgttttttttcgtgattctctgcag
    2ORGLA01G0098500.1.exon27,556,2647,556,1930072 
    TACGCGCACAGGGGGTGTGTGCAGAGATGGTGCGATGAGAAGGGGAGCACGCTCTGCGAG
ATATGCCTTCAG
     Intron 2-37,556,1927,555,719474 
    gtttgtgttctgatcgattgatcaa..........cgacagtgtgtttttttgctgtcag
    3ORGLA01G0098500.1.exon37,555,7187,555,6510268 
    AATTTCGAGCCGGGCTACACTGCTCCTCCCAAGAAAGCTCAACCTGCCCATGTCGCAGTG
ACCATCAG
     Intron 3-47,555,6507,554,715936 
    gtgagcctctcctctctctggaatt..........tttttttttttctcttttgctgcag
    4ORGLA01G0098500.1.exon47,554,7147,554,58520130 
    AGAAAGCCTTGAGGTTCCCAGGCCAAGCTACGAGCCGGAGGACACGCCATTGATCGGCGA
GCAGGAGTACGCCCAGTGCGCCGGAGCGGCCGGCAGGAGCGCCACCTGGTGCAGATCGGT
GGCCGTCACG
     Intron 4-57,554,5847,554,466119 
    gtacgtgacttggacagaaactgaa..........gaattttgtctgcttgttcatgcag
    5ORGLA01G0098500.1.exon57,554,4657,554,3820084 
    TTCACGGCTGTTCTGCTGCTGAGGCATCTCGTCGCTGTCGTGACGGTCGGAGCTGCACAC
CAGTACGCCTTCAGCCTCTTGACG
     Intron 5-67,554,3817,554,264118 
    gtgagtttaattggacgacccatct..........gaacatgtgttggtttgctttgcag
    6ORGLA01G0098500.1.exon67,554,2637,554,15600108 
    ATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATGAGGCTCATC
TCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGCTGCTCCAG
     Intron 6-77,554,1557,554,07779 
    gttagattacttgcaacctctgaac..........ttaacatttccttttcttgctgcag
    7ORGLA01G0098500.1.exon77,554,0767,553,9960081 
    GAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAGAACAAAATCAA
CATGCCATTCTTGTCCGGTGA
    3' downstream sequence 
    acaaagaatgaagtggttctcctgtagaaaagactgcaaagttgtattat..........

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