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    Oryza glaberrima (Oryza_glaberrima_V1) ▼

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    Transcript: ORGLA01G0037900.1

    Location

    Chromosome 1: 2,592,891-2,596,747 reverse strand.

    About this transcript

    This transcript has 10 exons, is annotated with 19 domains and features, is associated with 86 variant alleles and maps to 32 oligo probes.

    Gene

    This transcript is a product of gene ORGLA01G0037900 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtFlags
    -ORGLA01G0037900.12124707aa
     
    Protein coding
    		I1NKI9 Ensembl Canonical

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    Markup
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........cttatgtttgtttcttttagataatgtcacttatgtttgtgttttgcata
    1ORGLA01G0037900.1.exon12,596,7472,596,60001148 
    ATGTTGATAATTTCTCGAAGAATGAGTGCTGGAAAGAAGACTCAGACCGAGAACGAGTTC
CGTGAGCTCCCGGAAAAGGAGCTAGGAGGGGTGGTCTTTTGTTGCAATAACAACACATTC
GATGAATGCTTCACTAAACAGTTATTTG
     Intron 1-22,596,5992,596,435165 
    gttagtaaaagtcccttttcgcctg..........cattcgtttgccttttggttgatag
    2ORGLA01G0037900.1.exon22,596,4342,596,23210203 
    GTTTGCCTCAACGCAATATCTTGTATGTGAAGAATGTTAAACCTGGCTTGCCTCTCTTTC
TGTTCAATTATAGTAACAGACAATTGCATGGCATTTTCAAGGCTACAAGCACTGGCCAGC
TTAATATCGACCGATTTGCTTGGATGTCTGAACAGTCTAATGATGCAAAGACAAATGCAA
AGACAACACCATTTCCTGCACAG
     Intron 2-32,596,2312,596,15577 
    gtataatagaaacaacatatactgg..........cattgtgaatatttgtgttcttcag
    3ORGLA01G0037900.1.exon32,596,1542,595,43800717 
    GTCCGCTTCTCTACCAGGACAGAGTGCCCTCCACTTCCAGAAAACAAATACAAAAGTGTA
ATCATAAACAATTATCGCAAGGATATACCTAGCCACTTCCGTTTTGAGCTAGACCATCGA
CAAACAAGAGATTTGATTTCTTTGTTTCTATCTGCTCCTGTTCGCGCTAATAAAAACAAA
CTTAGTATTCCAAAACCTCCTGCTACCGCTCATACTGTTCCAAATCCATGGAATCGACCT
CTGCCATTTCTAACAGCAAAAGCACCTGTTGTTTCTGATAAAGTGAAGAGTGAATCCAAT
GTGAAGGATGTGGATCAGTTCAATGTTTCATCACACTCACATGATATTGCTCCTCATACC
TTGCCTGATGTAGAAGTCGACCTTGCTAGCACAAGTACAACATCAAGGAGCAACCTTAAC
AAAGATGCTTCTGGCTGTGTTGATCTGGTTGCTGGTTTGATCAAGGAAGATAAAGAATCT
GTGGATGATGGCCAGCATGCTAAAATGGCTTTGCCAGTAAAGCTGCAAGAGCTGTCTTCT
TTACAACAGAAGGGAGCCAATTTCTTGGAGGATGCTCCTATTTCTACTTCAGCTCAAAGC
ATACGTCAAGATACACGGTTTGCTGCTACTCTCCCCAAAGATTCATCTAATGCCACATCT
CAATGTGACACATCATTGAAAGATACATCCTTTGTGCAATGCCATGAATATGCTGAG
     Intron 3-42,595,4372,595,319119 
    gtgccttaagctattccatccctta..........tgctatttttggcatttgtctgtag
    4ORGLA01G0037900.1.exon42,595,3182,595,2620057 
    CTTTATCAAATTATCAATGATTTATCCAAGAAGACCGAAGAAATGGAAAAGATGAAG
     Intron 4-52,595,2612,595,019243 
    gtacttttcttcttgcttaaaatca..........cttgattatggtttgaacgttctag
    5ORGLA01G0037900.1.exon52,595,0182,594,67601343 
    ATTGATTCAGATCAAGAAATTTTGTTGTTGAAGAAATTGGTAAAGGTTATGGAAAGAAAA
GTCGAACATCTGGAACAGCAGCTTGAGAAATCGCATAGCTCTTCAGCACCACTCTTCGGT
GTAACAAATGATGATGTAGAAGGGCCATCAATACTCCTAACAGGTGGCCATAATGGCATT
AACTGGCTGTCATCCCTTGATTCATATTGCCCTGCAACGGACATACTAGAAACTCTAATG
CTGATGAGCTCAGCCCGTGCATATGCGGCTGTTGCCACATTAAAGGACCATGTCTTCATT
TTTGGTGGTTGGAATGGCATTCGCAGTTTGTGGTACAACACAG
     Intron 5-62,594,6752,594,59977 
    gtaaacattcttcgacatgccaaac..........accatctgcatttgttttattgcag
    6ORGLA01G0037900.1.exon62,594,5982,594,39910200 
    TGGAGTGCTACAACAGGGGAGCCAATAAGTGGATAGGATTGCCCTGCTTGAATCATGAGA
AAGGGCATCTTGCTGGAGCTACCTTGAATGGTAAAATATTTGCTATTGGTGGGGGTGATG
GGTCTCAGTCTTTTTCAGAAGTAGAGATGTTTGATCCAGCAGCGGGGAAATGGATATACA
ATTTGTCCATGCAGCAACCT
     Intron 6-72,594,3982,593,730669 
    gtatggttctacttctactccctta..........acctacatgtattttattgttccag
    7ORGLA01G0037900.1.exon72,593,7292,593,6530277 
    CGATGTGCTCCTGCTGCGGCTGAATTAAATGGCGTTCTTTATGTAATTGGTGGTTATGAT
GGCAACATGTACTTACA
     Intron 7-82,593,6522,593,56291 
    gttacgatccacccctcaccattct..........gaatgattgatcctcatatgcacag
    8ORGLA01G0037900.1.exon82,593,5612,593,46022102 
    GTCAGCAGAAAGGTATGATCCAAGGGAAGGTTTCTGGACCCAACTTCCACGTATGCGGAC
AAGAAGAGGATCCCATTCAGTAGTTGTCTTGGGGGATTCACT
     Intron 8-92,593,4592,593,267193 
    gtgagtttcgctcgctttatctgtg..........tccaacatgggaatttcattttcag
    9ORGLA01G0037900.1.exon92,593,2662,593,08020187 
    ACATGCTCTGGGTGGCCTGAATAGAAATACCACGTTTTCCAGCGTAGAGATTTTTGACAC
CCGTGCCAACTCATGGAGAAGGGGGAGCCCACTCAGCGTCCCAAGAGCACACGGATGTGC
GGTTACAGTGGACGGCAACGCATACCTCATTGGTGGGATCCAAAGCAGTGAAGAATACGT
TGAAACT
     Intron 9-102,593,0792,592,98199 
    gtgagttctttcccaagatcactct..........tctctcgttttattttgtttcacag
    10ORGLA01G0037900.1.exon102,592,9802,592,8910090 
    GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCATTCGGGAAG
AGAGCTTTCGCATGCGCCGTTGCCATTTGA
    3' downstream sequence 
    caggattgcagaagtgcagatgaacccccgggccggttttgtacagcacc..........

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