Oryza glaberrima (Oryza_glaberrima_V1)
Description

Transducin/WD40 repeat-like superfamily protein [Source:Projected from Arabidopsis thaliana (AT2G40360) TAIR;Acc:AT2G40360]

Location
About this transcript

This transcript has 17 exons, is annotated with 26 domains and features, is associated with 47 variant alleles and maps to 54 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ORGLA07G0103500.12037678aa
 
Protein coding
I1QA93 Ensembl Canonical

Domains

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  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
PROSITE profiles341378-PS50294-
Pfam78334BOP1, N-terminal domainPF08145IPR012953 [Display all genes with this domain]
SMART78334BOP1, N-terminal domainSM01035IPR012953 [Display all genes with this domain]
HAMAP1677WD repeat BOP1/Erb1MF_03027IPR028598 [Display all genes with this domain]
PANTHER24677WD repeat BOP1/Erb1PTHR17605IPR028598 [Display all genes with this domain]
SMART334373WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam336372WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles341382WD40 repeatPS50082IPR001680 [Display all genes with this domain]
SMART376415WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART540579WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam553579WD40 repeatPF00400IPR001680 [Display all genes with this domain]
SMART583622WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam586621WD40 repeatPF00400IPR001680 [Display all genes with this domain]
SMART634677WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam637676WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE patterns360374WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
Superfamily299676WD40-repeat-containing domain superfamilySSF50978IPR036322 [Display all genes with this domain]
Gene3D324678WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]

Other features

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  • Feature type
  • Start
  • End
Feature typeStartEnd
MobiDBLite176
MobiDBLite2159
Seg1534
Seg5066
Seg319328
Seg403414
Seg493504
Alphafold1678