Oryza glaberrima (Oryza_glaberrima_V1)
Description

protein kinases;ubiquitin-protein ligases [Source:Projected from Arabidopsis thaliana (AT5G13530) TAIR;Acc:AT5G13530]

Location
About this transcript

This transcript has 15 exons, is annotated with 52 domains and features, is associated with 94 variant alleles and maps to 68 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ORGLA05G0131100.149201639aa
 
Protein coding
I1PVB3 Ensembl Canonical

Domains

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  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
CDD359-cd23140-
Superfamily560-SSF57850-
Gene3D140451-1.10.510.10-
CDD142429-cd14014-
PROSITE profiles516548-PS50297-
PROSITE profiles730761-PS50297-
PROSITE profiles763795-PS50297-
SMART473502Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
Pfam494578Ankyrin repeatPF12796IPR002110 [Display all genes with this domain]
SMART516545Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
PROSITE profiles516548Ankyrin repeatPS50088IPR002110 [Display all genes with this domain]
Prints517532Ankyrin repeatPR01415IPR002110 [Display all genes with this domain]
SMART549578Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
SMART584613Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
PROSITE profiles584616Ankyrin repeatPS50088IPR002110 [Display all genes with this domain]
Pfam590670Ankyrin repeatPF12796IPR002110 [Display all genes with this domain]
SMART617648Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
SMART652683Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
SMART691725Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
Pfam709794Ankyrin repeatPF12796IPR002110 [Display all genes with this domain]
SMART730759Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
PROSITE profiles730762Ankyrin repeatPS50088IPR002110 [Display all genes with this domain]
Prints746760Ankyrin repeatPR01415IPR002110 [Display all genes with this domain]
SMART763792Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
PROSITE profiles763795Ankyrin repeatPS50088IPR002110 [Display all genes with this domain]
SMART796831Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
Gene3D470583Ankyrin repeat-containing domain superfamily1.25.40.20IPR036770 [Display all genes with this domain]
Superfamily494807Ankyrin repeat-containing domain superfamilySSF48403IPR036770 [Display all genes with this domain]
Gene3D584728Ankyrin repeat-containing domain superfamily1.25.40.20IPR036770 [Display all genes with this domain]
Gene3D729857Ankyrin repeat-containing domain superfamily1.25.40.20IPR036770 [Display all genes with this domain]
PANTHER11626E3 ubiquitin-protein ligase KEGPTHR46960IPR044584 [Display all genes with this domain]
Pfam871988Mind bomb, SH3 repeat domainPF18346IPR040847 [Display all genes with this domain]
Pfam9951115Mind bomb, SH3 repeat domainPF18346IPR040847 [Display all genes with this domain]
Pfam11211171Mind bomb, SH3 repeat domainPF18346IPR040847 [Display all genes with this domain]
Pfam11771239Mind bomb, SH3 repeat domainPF18346IPR040847 [Display all genes with this domain]
Pfam12471367Mind bomb, SH3 repeat domainPF18346IPR040847 [Display all genes with this domain]
Pfam13731494Mind bomb, SH3 repeat domainPF18346IPR040847 [Display all genes with this domain]
Pfam15041621Mind bomb, SH3 repeat domainPF18346IPR040847 [Display all genes with this domain]
PROSITE profiles141437Protein kinase domainPS50011IPR000719 [Display all genes with this domain]
Pfam177430Protein kinase domainPF00069IPR000719 [Display all genes with this domain]
Superfamily175433Protein kinase-like domain superfamilySSF56112IPR011009 [Display all genes with this domain]
SMART651Zinc finger, RING-typeSM00184IPR001841 [Display all genes with this domain]
PROSITE profiles652Zinc finger, RING-typePS50089IPR001841 [Display all genes with this domain]
PROSITE patterns2534Zinc finger, RING-type, conserved sitePS00518IPR017907 [Display all genes with this domain]
Pfam649Zinc finger, RING-type, eukaryoticPF13445IPR027370 [Display all genes with this domain]
Gene3D281Zinc finger, RING/FYVE/PHD-type3.30.40.10IPR013083 [Display all genes with this domain]

Other features

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  • Feature type
  • Start
  • End
Feature typeStartEnd
Seg72124
Seg167172
Seg673685
Seg781788
Seg10321046
Seg14931505