Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: ORGLA01G0265200.1

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Location

Chromosome 1: 23,556,616-23,573,152 reverse strand.

About this transcript

This transcript has 32 exons, is annotated with 22 domains and features, is associated with 149 variant alleles and maps to 47 oligo probes.

Gene

This transcript is a product of gene ORGLA01G0265200 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	ORGLA01G0265200.1	3333	1110aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I1NS12	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	50	180	-	SSF49599	-
Gene3D	192	520	-	3.90.70.10	-
CDD	193	521	-	cd02659	-
Gene3D	681	797	-	3.10.20.90	-
Gene3D	798	895	-	3.10.20.90	-
PROSITE profiles	52	175	MATH/TRAF domain	PS50144	IPR002083 [Display all genes with this domain]
SMART	54	156	MATH/TRAF domain	SM00061	IPR002083 [Display all genes with this domain]
CDD	54	175	MATH/TRAF domain	cd00121	IPR002083 [Display all genes with this domain]
Pfam	55	175	MATH/TRAF domain	PF22486	IPR002083 [Display all genes with this domain]
Superfamily	190	548	Papain-like cysteine peptidase superfamily	SSF54001	IPR038765 [Display all genes with this domain]
Pfam	195	516	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PF00443	IPR001394 [Display all genes with this domain]
Gene3D	49	191	TRAF-like	2.60.210.10	IPR008974 [Display all genes with this domain]
Pfam	620	872	Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain	PF12436	IPR024729 [Display all genes with this domain]
Pfam	882	1088	Ubiquitin carboxyl-terminal hydrolase, C-terminal	PF14533	IPR029346 [Display all genes with this domain]
PANTHER	72	522	Ubiquitin carboxyl-terminal hydrolases	PTHR24006	IPR050164 [Display all genes with this domain]
PROSITE profiles	195	519	Ubiquitin specific protease domain	PS50235	IPR028889 [Display all genes with this domain]
PROSITE patterns	196	211	Ubiquitin specific protease, conserved site	PS00972	IPR018200 [Display all genes with this domain]
PROSITE patterns	435	452	Ubiquitin specific protease, conserved site	PS00973	IPR018200 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	1	21
Seg	437	451
Seg	544	558
Alphafold	1	1110

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