Oryza glaberrima (Oryza_glaberrima_V1)
Description

RNA recognition motif (RRM)-containing protein [Source:Projected from Arabidopsis thaliana (AT3G23900) TAIR;Acc:AT3G23900]

Location
About this transcript

This transcript has 3 exons, is annotated with 38 domains and features, is associated with 27 variant alleles and maps to 26 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ORGLA01G0000700.12937978aa
 
Protein coding
I1NJG7 Ensembl Canonical

Domains

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  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
PANTHER325665-PTHR32343-
CDD360425-cd00590-
SMART85188Filamin/ABP280 repeatSM00557IPR001298 [Display all genes with this domain]
PROSITE profiles81185Filamin/ABP280 repeat-likePS50194IPR017868 [Display all genes with this domain]
Pfam83181Filamin/ABP280 repeat-likePF00630IPR017868 [Display all genes with this domain]
Superfamily83183Immunoglobulin E-setSSF81296IPR014756 [Display all genes with this domain]
Gene3D83192Immunoglobulin-like fold2.60.40.10IPR013783 [Display all genes with this domain]
Gene3D321437Nucleotide-binding alpha-beta plait domain superfamily3.30.70.330IPR012677 [Display all genes with this domain]
PROSITE profiles358429RNA recognition motif domainPS50102IPR000504 [Display all genes with this domain]
SMART359425RNA recognition motif domainSM00360IPR000504 [Display all genes with this domain]
Pfam362422RNA recognition motif domainPF00076IPR000504 [Display all genes with this domain]
Superfamily337436RNA-binding domain superfamilySSF54928IPR035979 [Display all genes with this domain]
PROSITE profiles262285Zinc finger, CCCH-typePS50103IPR000571 [Display all genes with this domain]

Other features

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  • Feature type
  • Start
  • End
Feature typeStartEnd
MobiDBLite40101
MobiDBLite501517
MobiDBLite501905
MobiDBLite519561
MobiDBLite567600
MobiDBLite611634
MobiDBLite673824
MobiDBLite825839
MobiDBLite840895
MobiDBLite921978
Seg1252
Seg6176
Seg86105
Seg186198
Seg300334
Seg443496
Seg512549
Seg552647
Seg662673
Seg675696
Seg721733
Seg795842
Seg853863
Seg866877
Alphafold1978