Transcript: OB03G13660.1
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- OB03G13660.1 894 297aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
J3LJZ0 - A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.html Ensembl Canonical,
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{"url":"/Oryza_brachyantha/Component/Transcript/Sequence_cDNA/sequence?g=OB03G13660;r=3%3A2175385-2178374;t=OB03G13660.1;db=core;time=1743476291006.006;adorn=only","provisional":{"seq":[{"style":[7]},-13,{"style":[7,-53,0]},{"style":[4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-1,6,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5]},{"style":[3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5]},{"style":[4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2]},{"style":[6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,8,2,-1,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2]},{"style":[9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,5,1,-1,6,-2,1]},{"style":[3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-1,8,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8]},{"style":[9,-2,8,-2,9,-2,8,-2,9,-2,8,5,-1,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5]},{"style":[3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8]},{"style":[9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2]},{"style":[4,-2,2,-2,4,-2,2,-1,5,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5]},{"style":[3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,8,2,-1,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2]},{"style":[9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8]},{"style":[4,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5]},{"style":[3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1]},{"style":[3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,7,0]},{"style":[7]},-13,{"style":[7,-53,0]},{"style":[7]},-13,{"style":[7,-53,0]}],"expect":["variants","variants"],"flourishes":{},"ref":{"style":[[0,""],[0,"background-color:#fff9af;color:#1044ee"],[32,"333333"],[-11,"fff;color:#1044ee"],[11,"333333"],[-32,"color:#1044ee;background-color:#fff9af"],[35,"fff"],[-28,"333333"],[5,"3;background-color:#fff9af"],[23,"fff"]]},"legend":{"exons":{"exon1":{"class":"e1","default":null,"text":"Another exon","label":"#1044ee","config":"exon1"},"exon0":{"label":"#333333","config":"exon0","default":null,"class":"e0","text":"An exon"}},"_messages":[],"other":{"utr":{"label":null,"config":"utr","default":"#ffdf33","class":"cu","text":"UTR"}},"codons":{"c1":{"class":"c1","default":"#fff9af","text":"Alternating codons","label":null,"config":"c1"},"c0":{"config":"c0","label":null,"text":"Alternating codons","class":"c0","default":"#ffffff"}}}}}
1 ATG GAG ATG GAC CTG GCA ATC GAG CAG TAC GG G TGT GTG CAT TAC AGG AGG AAA TGC AAG 60
1 ATGGAGATGGACCTGGCAATCGAGCAGTACGGGTGTGTGCATTACAGGAGGAAATGCAAG 60
1 -M--E--M--D--L--A--I--E--Q--Y--G--C--V--H--Y--R--R--K--C--K- 20
61 ATA AGG GCG CCC TGC TGC GGC GAG GTC TTC GGT TGC AGG CAC TGC CAC AAC GAA GTG AAG 120
61 ATAAGGGCGCCCTGCTGCGGCGAGGTCTTCGGTTGCAGGCACTGCCACAACGAAGTGAAG 120
21 -I--R--A--P--C--C--G--E--V--F--G--C--R--H--C--H--N--E--V--K- 40
121 GAC TCG TTG GAG GTC AGC ATC AGC GAC CGC CAC GAG ATC CCT CGC CAT GAA ATC AAG CTG 180
121 GACTCGTTGGAGGTCAGCATCAGCGACCGCCACGAGATCCCTCGCCATGAAATCAAGCTG 180
41 -D--S--L--E--V--S--I--S--D--R--H--E--I--P--R--H--E--I--K--L- 60
181 GTT ATC TGC TCT GTT TGC AAC AAA GAA CAG GAT G TA CAA CAG GAT TGC TCA AAT TGC GGG 240
181 GTTATCTGCTCTGTTTGCAACAAAGAACAGGATGTACAACAGGATTGCTCAAATTGCGGG 240
61 -V--I--C--S--V--C--N--K--E--Q--D--V--Q--Q--D--C--S--N--C--G- 80
241 GCA TGC CTG GGT AAA TAT TTC TGT GCA AAA TGC AAC TTT TAT GAT GAT GAT C TG TCA AAG 300
241 GCATGCCTGGGTAAATATTTCTGTGCAAAATGCAACTTTTATGATGATGATCTGTCAAAG 300
81 -A--C--L--G--K--Y--F--C--A--K--C--N--F--Y--D--D--D--L--S--K- 100
301 AAC CAA TTT CAT TGT GAT GGA TGC GGC ATA TGT AG A ACT GGT GGT GCA GAG AAT TTC TTT 360
301 AACCAATTTCATTGTGATGGATGCGGCATATGTAGAACTGGTGGTGCAGAGAATTTCTTT 360
101 -N--Q--F--H--C--D--G--C--G--I--C--R--T--G--G--A--E--N--F--F- 120
361 CAC TGT GAC AAA TGT G GA TGT TGC TAT AGC TAT GTG CTG AAG GAT TCT CAT CGT TGT GTG 420
361 CACTGTGACAAATGTGGATGTTGCTATAGCTATGTGCTGAAGGATTCTCATCGTTGTGTG 420
121 -H--C--D--K--C--G--C--C--Y--S--Y--V--L--K--D--S--H--R--C--V- 140
421 GAG AGA GCA ATG CAT CAC AAC TGC CCT GTA TGC TTC GAG TAT TTA TTT GAC TCG ACA AAA 480
421 GAGAGAGCAATGCATCACAACTGCCCTGTATGCTTCGAGTATTTATTTGACTCGACAAAA 480
141 -E--R--A--M--H--H--N--C--P--V--C--F--E--Y--L--F--D--S--T--K- 160
481 GAC ATC AGT GCA CTG CAC TGT GGA CAC ACG ATT CAT CTG GAA TGC CTA TAC GAG TTA AGA 540
481 GACATCAGTGCACTGCACTGTGGACACACGATTCATCTGGAATGCCTATACGAGTTAAGA 540
161 -D--I--S--A--L--H--C--G--H--T--I--H--L--E--C--L--Y--E--L--R- 180
541 TCC CAT AAA CA G TTT TCA TGC CCA GTC TGC CTG AGG TCT GCT TGT GAC ATG TCC CAT GCA 600
541 TCCCATAAACAGTTTTCATGCCCAGTCTGCCTGAGGTCTGCTTGTGACATGTCCCATGCA 600
181 -S--H--K--Q--F--S--C--P--V--C--L--R--S--A--C--D--M--S--H--A- 200
601 TGG CAA AAG CTT GAT CAA GAG G TT GCA GCA TCA CCG ATG CCA GCG ATT TAT CAG AAG AAG 660
601 TGGCAAAAGCTTGATCAAGAGGTTGCAGCATCACCGATGCCAGCGATTTATCAGAAGAAG 660
201 -W--Q--K--L--D--Q--E--V--A--A--S--P--M--P--A--I--Y--Q--K--K- 220
661 ATG GTA TGT GAA TCC GGT CAC TTT CGT TCT TCA GTT AAA CCA GGT AAG TAT ATG CTG AAC 720
661 ATGGTATGTGAATCCGGTCACTTTCGTTCTTCAGTTAAACCAGGTAAGTATATGCTGAAC 720
221 -M--V--C--E--S--G--H--F--R--S--S--V--K--P--G--K--Y--M--L--N- 240
721 AAA AAA TGT TTT GGT TAT TTT GGA TGC AGA TAT GGA TCC TTT GCA ACG ATT GCC GGA AGA 780
721 AAAAAATGTTTTGGTTATTTTGGATGCAGATATGGATCCTTTGCAACGATTGCCGGAAGA 780
241 -K--K--C--F--G--Y--F--G--C--R--Y--G--S--F--A--T--I--A--G--R- 260
781 CAT CAA ACG TGC AGT TTC ACA TCT TGG GAC ACA AGT GCC CCG GAT GCA GCT CTT ACA ACA 840
781 CATCAAACGTGCAGTTTCACATCTTGGGACACAAGTGCCCCGGATGCAGCTCTTACAACA 840
261 -H--Q--T--C--S--F--T--S--W--D--T--S--A--P--D--A--A--L--T--T- 280
841 CCC GGC AGA CCA GAG GCG ACC CGG CGG CAT GCT CCA GAG TCT GAA GAA CAG TGA 894
841 CCCGGCAGACCAGAGGCGACCCGGCGGCATGCTCCAGAGTCTGAAGAACAGTGA 894
281 -P--G--R--P--E--A--T--R--R--H--A--P--E--S--E--E--Q--*- 297
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