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    Oryza brachyantha (Oryza_brachyantha.v1.4b) ▼

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    Transcript: OB11G10170.1

    Location

    Chromosome 11: 110,199-115,882 reverse strand.

    About this transcript

    This transcript has 8 exons and is annotated with 33 domains and features.

    Gene

    This transcript is a product of gene OB11G10170 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtFlags
    -OB11G10170.135241045aa
     
    Protein coding
    		J3N5D1 Ensembl Canonical

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    • UTR
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........tccccacccccttcttctccgtctcacgcacacccgcttgctcgctgtag
    1OB11G10170.1.exon1115,882115,789--94 
    AGGTCTCGACCTGGATCTGACGCGCCACCTCTCGCCGCCGGCTGCCTTCAGCCTTCTCCT
CCTTCTTGGCCTCCTCGGCGGCGCCCTACACTAT
     Intron 1-2115,788115,7890 
    
      
    
      
    
    
  
    2OB11G10170.1.exon2115,788115,56301226 
    
    
      
      
    
        
        
    ATGCTTACCCGCAAGCGGGAGGAGCTCGCCGACGACGTCGACGACTTGCAGAAGAAGACC
CGCGCCGACGCCAAGGACAACCACGACATGACCACCGGGAGAACCCCCGAGATCGATGAG
GACCTCCACAGCCGCCAGCTCGCCGTCTATGGCCGCGAGACCATGAAGCGCCTCTTCGCT
TCCAACGTCCTCGTCTCTGGCCTCAACGGACTCGGCGCCGAGATCG              

    
      
    
      
    
    
  
     Intron 2-3115,562114,896667 
    
    
      
      
    
        
        
    gtatgcccgactccacaaccccaca..........acttaatgccaatttattcctgcag

    
      
    
      
    
    
  
    3OB11G10170.1.exon3114,895114,67810218 
    
    
      
      
    
        
        
    CAAAGAACCTTGTCCTTGCGGGAGTCAAGTCCGTAACCTTGCATGATGATGATAAAGTGG
ATCTATGGGACTTATCAAGCAACTTCTTCCTATCAGAAAAGGATGTTGGTCAAAACCGGG
CTCAAGCCTGTATTCAGAAGCTACAAGAGCTCAATAATGCTGTTATTATCTCTACTATAA
CTGGTGATTTGACTAAAGAGCAACTTTCTAATTTTCAG                      

    
      
    
      
    
    
  
     Intron 3-4114,677113,706972 
    
    
      
      
    
        
        
    gtatgtgaggatgcagttgatctgc..........taatcattttgatgtgcatatacag

    
      
    
      
    
    
  
    4OB11G10170.1.exon4113,705112,91100795 
    
    
      
      
    
        
        
    GCTGTGGTCTTTACTGAAATCAGCTTAGAGAAAGCAGTTGAGTTTGACAGTTACTGCCAC
AACCATCAGCCACCAATTGCTTTCATTAAGTCAGAAATTCGTGGCCTTTTTGGCAGTGTC
TTCTGTGACTTTGGTCCTGAGTTCACTGTATTGGATGTTGATGGAGAGGAGCCACATACA
GGAATAGTAGCATCGATCAGCAATGACAACCCTGCGCTTGTTTCCTGTGTTGATGATGAG
CGTCTGGAGTTCCAGGATGGTGATTTAGTTGTGTTCTCAGAAGTCCATGGAATGACTGAA
CTAAATGATGGGAAACCAAGAAAGATTAAGAATGCTAGGCCATATTCTTTTACTCTAGAA
GAAGACACTAGCTCATATGGGACATATGTTAGAGGTGGTATCGTTACTCAGGTCAAGCCA
CCAAAGGTTCTTAAATTCAAACCTTTGAAAGAGGCCATTAAGGAACCAGGGGAGTTTCTC
ATGAGCGATTTCTCCAAGTTAGACCGTCCACCACTTTTGCATTTGGCTTTTCAAGCTTTG
GATAAGTTTAAGAGTGACCTGAAACGATTCCCTATTGCTGGGTCCACTGATGATGCACAA
AAGCTGATAGATTTTGCTGTTAGCATTAATGAGACTCTGGGTGATAGCAAACTTGAAGAG
CTTGACAAAAAGCTTCTGCACCATTTTGCAAGTGGTTCCAGGGCTGTTCTGAACCCTATG
GCTGCAATGTTTGGTGGTATTGTAGGTCAGGAAGTTGTGAAAGCATGCTCAGGGAAATTC
CATCCGCTTTACCAA                                             

    
      
    
      
    
    
  
     Intron 4-5112,910112,81398 
    
    
      
      
    
        
        
    gttagaatctgacaccttcttgata..........ttaatgtattttcttggttttgcag

    
      
    
      
    
    
  
    5OB11G10170.1.exon5112,812111,94402869 
    
    
      
      
    
        
        
    TTCTTCTATTTTGATTCTGTTGAATCTCTCCCTGTTGAACCATTGGAGCCGGGCGAGTTG
AAGCCAGAGAATACTAGATACGATGCACAAATCAGTGTTTTTGGATCTAAGCTTCAAAGG
AAGCTTGAGCAGGCGAAAATATTTATGGTTGGTTCTGGGGCACTTGGATGTGAATTCTTG
AAGAACCTTGCACTGATGGGCATTTCTTGCAGTGAGAATGGAAAGCTTACTGTGACAGAT
GATGATGTTATTGAAAAGAGCAACCTCAGTCGCCAGTTTCTCTTCCGTGACTGGAACATT
GGGCAGCCTAAGTCCACAGTTGCTGCTACTGCTGCTATGGCAATCAATCCTAAGCTTCAT
GTTGAGGCCCTTCAGAACAGAGCAAGTCCTGAGACTGAAAACGTATTCAATGATGCCTTT
TGGGAGGGCCTGGATGCTGTTGTCAATGCCCTGGACAATGTGACTGCAAGAATGTACATT
GATTCCCGATGTGTATATTTCCAGAAGGCGCTTCTGGAATCTGGGACTCTAGGTGCTAAA
TGTAACACACAGATGGTCATTCCTCACCTAACAGAGAACTATGGGGCATCCAGAGATCCA
CCTGAAAAGCAGGCGCCAATGTGTACCGTACATTCATTTCCTCATAATATTGATCATTGC
CTAACCTGGGCTAGGTCTGAGTTTGAGGGTTTACTTGAGAAGACCCCCACTGAAGTAAAT
GCTTTCCTGTCAAATCCTAGCGGATATTCAACTGCAGCAAGAACTGCTGGTGATGCACAA
GCTAGGGATCAGCTTGAGCGTGTTATTGAATGCCTCGAGAGAGAGAAGTGTGAGACGTTT
CAAGATTGCATTACCTGGGCACGTCTTAA                               

    
      
    
      
    
    
  
     Intron 5-6111,943111,741203 
    
    
      
      
    
        
        
    gtaagcttacacctctctcttgcac..........tgtttctattgatggtgcatcatag

    
      
    
      
    
    
  
    6OB11G10170.1.exon6111,740111,30820433 
    
    
      
      
    
        
        
    GTTTGAGGATTATTTCTCCAACCGTGTGAAGCAACTGACATTCACCTTCCCTGAAGATGC
AATGACCAGCTCTGGTGCTCCTTTCTGGTCTGCTCCAAAACGGTTCCCACGACCGCTGGA
ATTCTCGACGTCTGATCCAAGTCAGCTTAACTTTATTGTGGCTGCTGCAATTTTAAGGGC
AGAAACATTTGGAATACCAATACCTGACTGGACCAAAAGCCCAGCGAAGTTGGCTGAAGC
TGTTGACAAGGTGATTGTTCCTGATTTCGAACCAAAACAAGGGGTTAAGATAGTTACAGA
TGAGAAGGCTACTAGCCTATCCTCTGCATCTGTTGATGATGCCGCTGTCATTGAGGAACT
TGTTGCAAAGTTAGAAGCAATTTCCAAGACACTGCCCCCAGGATTCCACATGAAACCAAT
ACAGTTTGAGAAG                                               

    
      
    
      
    
    
  
     Intron 6-7111,307111,088220 
    
    
      
      
    
        
        
    gtcagtacatcatatcaatctgctc..........taagcagctttttatgtatgtgcag

    
      
    
      
    
    
  
    7OB11G10170.1.exon7111,087110,49100597 
    
    
      
      
    
        
        
    GATGATGACACCAATTACCATATGGACGTGATAGCTGGTTTTGCTAACATGCGGGCAAGG
AACTACAGCATTCCTGAAGTGGACAAGCTGAAGGCCAAGTTTATAGCTGGCAGGATCATT
CCTGCCATAGCCACCTCAACTGCGATGGCTACCGGACTTGTCTGCTTGGAACTGTACAAA
GTACTCGCTGGTGGGCACAAGGTTGAAGACTACAGGAACACATTTGCAAACCTTGCCATC
CCCCTATTCTCCATGGCTGAGCCGGTCCCACCCAAGACCATCAAGCACCAGGACATGGCC
TGGACTGTCTGGGACCGCTGGACCATAACTGGCAACATCACGCTGAGGGAGCTCCTGGAC
TGGCTCAAGGAGAAGGGCCTCAATGCGTACAGCATATCCTGCGGCACCTCGCTGCTGTAC
AACTCCATGTTCCCAAGGCACAAGGAGCGGCTGGACAAGAAGGTGGTGGATGTGGCGAGG
GAGGTGGCCAAGGTGGAGGTGCCCCTGTACCGTCGCCATCTCGACGTTGTGGTGGCCTGT
GAGGACGACGATGACAATGACGTTGACATCCCACTGGTATCAATTTACTTCCGGTGA   

    
      
    
      
    
    
  
     Intron 7-8110,490110,4910 
    
    
      
      
    
        
        
    
      
    
      
    
    
  
    8OB11G10170.1.exon8110,490110,199--292 
    
    
      
      
    
        
        
    ACCCCGTTGACCTGTGTTTGGTCGTATCAGAGAAACAATGTATAAGTTGGTTGCACCTGT
GCCTGTAAACCAAGTGGGGTTTAAGCCACATTACTGATTTTCTTTGCTACCTTCTTCATA
GAGCTCCTTGAGATGAAGCTTGATACGACACCGTATTGATAATTGATGCATGAGCCTACC
ATGTCATGTTTGCGATGGAACAACCAAGTGTCTGTTTTGTTCAGTCGCATCTTGTGCACT
TCTCGATGGGCATCATGGCACCACCTAAATTTACTTGTTAAATGCTGTGACC        

    
      
    
      
    
    
  
    3' downstream sequence 
    
    
      
      
    
        
        
    acctgagttttttttttccttttgatgataaatcataggaatctcacata..........

    
      
    
      
    
    
  
    
    
    
  
      
    
        
        
        
      
    
    
    
      
    
    
  
      
    
  
        
  
      
    
    
    
  
    
  
  
  
  
  
  
  
  
  
  
    
  
  
  
    
    
  



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