Oryza brachyantha (Oryza_brachyantha.v1.4b)
Description

chromatin remodeling 4 [Source:Projected from Arabidopsis thaliana (AT5G44800) TAIR;Acc:AT5G44800]

Location
About this transcript

This transcript has 11 exons and is annotated with 68 domains and features.

Gene

This transcript is a product of gene OB07G21060 Show transcript tableHide transcript table

Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OB07G21060.168272268aa
 
Protein coding
J3ML24 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
  • loading
Show/hide columns
  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........ttgctgattttgaactaccaactaaggaaatgctcttccgttgctagcag
1OB07G21060.1.exon110,141,17010,141,151--20
CATGTGACGTTGATACTCTA                                        
 Intron 1-210,141,15010,141,1510

      
2OB07G21060.1.exon210,141,15010,140,93200219
ATGATGAAGGAGAGGAGCTCTTTATGTGAAAGTGCGGCAGATGGAAATTGGGTTTTGAAA
TACAAAAGGAAACGGAGCAAGTTAACGGTTAGTCCATCAAGTGAGCATGGAGCTTCCTCA
CCAGTACTGGATTCTCCAATGAACAATGGCTCTATCAAAAAGAAGTTCAAATATGACAAC
ATTTCTCCATCAGCCAAGAAGATAAGAGGAAATGATGGG                     
 Intron 2-310,140,93110,140,259673
gtgaatatctgctctgatactttcc..........atacgcatttcttgtgtttcttcag
3OB07G21060.1.exon310,140,25810,140,15700102
TACTTCTATGAGTGTGTAGAATGTGATCTTGGTGGCAACTTGCTGTGCTGTGATAGCTGT
CCTCGAACATACCACTTGGAATGTCTTAATCCCCCTCTCAAG                  
 Intron 3-410,140,15610,140,056101
gtttgaatcttttctgttgtttctt..........gcatatgcttccatctccaatatag
4OB07G21060.1.exon410,140,05510,139,42300633
CGTGCACCACCTGGAAATTGGCAATGCCCAAGATGCCGTACGAAAAAAGTAAGTTTGAAG
CTCTTAGACAATGCTGATGCTGACACCTCTAAACGTGAAAGGACAAGGAGAATGCGCACA
AGTACCACATCAGACAGCCCATCTCCACATAACAAAGTCTCTTTTAATACATCACGTGGT
GCTGCTAAGGATGATGAACCCAGTGCAAAAGACAATGGAGTTGAGAAAAGGAAACCATTA
ATCTTACATTTGAAGAAGCGTTCAACCAAGGAACTATCTACAGATACCACATCCTCAAAG
TCAGGGTTGCTTGGAAAGTCTTCAGAAGAGAAACATGATAAGCATGAAAGTACTTTGAAA
GTGAAGAAACCTCTGCAGTCCATGGAACTACCTCCAAAGAAATATAAGAACAAGAAGCAA
CAAAGTCACAGAGAAAGTAAGAGATCTGAAGCAAAAAAGGTCAAATATGTGGCATCAGAT
GTGGACAGTGATTCTTCAATGGAACCATCTACTTCTCTTGAGCACAGCGAATCACCACCA
CCCAAAAAAAAACCATTGGATGGAAGAACACCTGCATCAAGTACCAAGAAAGGAAAAAAG
AAAGTGAAATTTGTTGATAAAAAACATCCTGAG                           
 Intron 4-510,139,42210,138,1531,270
gtattcaaacaaaactttgttatgc..........aactctctgacatacttatgttcag
5OB07G21060.1.exon510,138,15210,138,0810072
AATGCCGTTCATGTAACTGAAAAGGAGCATGGTGGTGCAGGAGACAAAATAATGACTCAG
GAGGACCGGCAG                                                
 Intron 5-610,138,08010,137,905176
gtttgttctaacaactatgtgctag..........tcacaaaactttgtactttgcttag
6OB07G21060.1.exon610,137,90410,135,181002,724
GTTGATCGCGTCCTAGGATGTCGTCTTCAGACAAGTCAAATCATTTCACCTGCCCAGGCT
TCATCACAGCAGATTGAATCAACTAATTTGCATCTGGATGATATGGCCACTCCTAATGCT
TCCAGTCTACCAGAACCTAGTCAAGCCTTTTCAAAAGGATTTCATGAAGAAGTTCAGTCA
TCTAAAAGTGATACTAATGTGACAGAGGATGCATGTGCTGATGAATTAGAAAACCATGGT
GGTGAAAATCATTTGGATTGTTCTGAAGCTCAAAAGGACAGTAACGTTAGATCCCATGAA
CACAAGGAGTCACTTAGCGCAAAAGAAATCATGAATACATCATTAGTGCATTCCACTGAT
CAAATCATCACAGTAAAAGATGCTGGAGCTGTACAGACGAATGTAACAGCTTCAGTAAAT
GGTGAATATGAGACAGTAACTGACATTCCAGAAGAAAAGAATAACACTAAACATTCAGTT
TCCAAAGCTGAGGCAGAAGTCCATACTAAACAAGAACATACACCTGAAAGTAAATTACAT
GTGAAAATACAAGAAGCTGAAGGGAAGGAGCTTGAAGGAACTACTTATGAGTTTTTAGTC
AAATGGGTTGGCAAATCGAATATCCATAACAGCTGGATTTCTGAATCTGAACTGAAAGTA
TTAGCTAAAAGGAAACTAGAAAATTACAAAGCAAAGTATGGAACGTCTTTGATAAACATT
TGCAAAGAACAATGGTGCCAACCACAAAGAGTTATTGCTCTGCGCACTTCTTTAGATGAA
GTAGAAGAAGCTTTGATCAAATGGTGTGGTCTTCCTTATGACGAATGCACGTGGGAAAGA
TCAGATGAACCTACAATGGTGAAATATGCCCATTTGGTCACACAGTTCAAAAAATTTGAC
TGCCAGGCTTTGGATAAGGATATGGGAGGTAAAGCAAATGCAAGAGACCGCCAAGAGCTT
AATGTGTTGGTTGAGCAGCCAAAAGAACTCCAGGGAGGCATGCTTTTCCCTCATCAACTG
GAAGCATTGAACTGGCTACGCAAGTGCTGGTACAAGTCAAAAAATGTTATCCTTGCTGAT
GAGATGGGTCTTGGAAAGACTGTGTCAGCCTGTGCTTTTCTATCATCCCTTTGCTGTGAA
TTTAAGATTAATTTGCCATGCCTTGTCTTGGTTCCTCTTTCTACTATGCCCAACTGGATG
GCTGAGTTTGCTTCATGGGCACCTCATTTAAATGTTGTGGAGTATCATGGTTCTGCACGG
GCAAGATCTATTATTCGTCAATATGAATGGCATGAGGGTGATGCAAGCCAGATAGGTAAA
ATCAAGAAGTCTCACAAGTTCAATGTTTTGCTCACTACTTACGAAATGGTGCTTGTTGAT
GCTGCATATCTTCGTTCTGTATCATGGGAGGTTCTTATAGTTGATGAGGGTCATCGTCTG
AAGAACTCTAGCAGCAAACTCTTCAGTTTGCTCAATACATTATCGTTTCAGCATAGAGTT
TTGCTGACTGGAACTCCGTTACAGAATAACATTGGTGAAATGTATAACTTATTGAACTTC
TTACAACCTTCTTCTTTCCCTTCTCTAGCTTCATTTGAGGAGAAGTTCAATGACCTTACA
ACAGCAGAGAAAGTGGAGGAGCTGAAGAAACTTGTAGCTCCACATATGCTTCGAAGACTG
AAAAAGGATGCAATGCAAAATATCCCTCCGAAGACGGAGCGAATGGTGCCTGTCGAATTG
ACATCAATTCAGGCTGAATACTACCGTGCTATGCTTACAAAGAATTATCAAGTACTGCGC
AATATTGGGAAAGGTGGTGCTCACCAGTCATTGTTGAACATAGTAATGCAGCTTCGGAAA
GTCTGCAATCATCCATATCTTATTCCTGGAACTGAACCTGAATCAGGATCACCAGAATTT
TTGCATGAAATGCGAATAAAGGCCTCAGCAAAGTTAACTTTGTTGCACTCTATGCTTAAA
ATCCTACACAAGGATGGTCATCGAGTTCTTATTTTTTCTCAGATGACAAAGCTTCTTGAC
ATCCTTGAAGATTACCTGACTTGGGAGTTTGGTCCGAAAACATTTGAAAGAGTGGATGGT
TCGGTATCTGTGGCAGAACGCCAGGCAGCAATTGCTCGCTTTAATCAGGACAAGAGTCGT
TTTGTGTTCCTGCTATCTACACGATCATGTGGGCTTGGTATTAATTTGGCAACTGCAGAT
ACTGTTGTCATATATGATTCTGATTTCAATCCACATGCCGATATACAGGCAATGAACAGG
GCACACAGAATCGGGCAGTCAAATAGACTTTTAGTTTACAGGCTTGTTGTGCGTGCTAGT
GTTGAGGAGCGTATCTTGCAACTTGCGAAGAAAAAATTGATGCTTGATCAACTTTTTGTT
AACAAATCAGAATCACAGAAAGAAGTGGAAGATATTATTCGTTGGGGAACAGAGGAACTC
TTCAGGAATAGTGATGGTGCAAATGTTAAAGATAATAATGAAGCTTCTAGTGCTAAAAAT
GATATAGCAGATGTTGAGTTTAAGCATAGAAGAAAAACTGGTGGACTAGGCGATGTTTAT
GAAGACAGGTGTGCTGATGGTTCTGCTAAATTTATTTGGGATGAAAATGCTATCACAAAG
CTTCTTGACAGATCCAACCTTCCATCAACAGTAGCTGAAAGCACTGATGGGGACTTGGAC
AATGATATGCTTGGCACTGTAAAG                                    
 Intron 6-710,135,18010,134,881300
gtaatttaatttatgtgccttattt..........tctctcctttacaccaatttatcag
7OB07G21060.1.exon710,134,88010,134,72602155
TCAATAGATTGGAATGATGAGCTGAATGATGATCCTGGCGCCACTGAGGACGTCCCAAAT
ATTGATAATGATGGTTCCGAGCAGGCATCTGAAACAAAGCAGGATGCAACTAATCGTGTA
GAAGAAAATGAATGGGACAAACTCTTACGTGTCAG                         
 Intron 7-810,134,72510,134,063663
gtgctgcactagaccatgtatttgt..........tctctctctctctctgttatctcag
8OB07G21060.1.exon810,134,06210,133,94820115
ATGGGAGCAGTATCAAATTGAGGAGGAAGCATCTCTTGGCCGAGGTAAGCGTTTAAGGAA
GGCTGTTTCTTACAGGGAAACATTTGCAACCATTCCTAATGAAGCTTTAAGCGAG     
 Intron 8-910,133,94710,131,7682,180
gtaattctgcgttttgaccttgctc..........tgatgattttctgacattgatatag
9OB07G21060.1.exon910,131,76710,131,7000268
GACTCTGATGAGGAGGACGAACCAAAGAGAGAATACACTGCAGCTGGACTGGCTTTGAAG
GAAAAATA                                                    
 Intron 9-1010,131,69910,131,568132
gtatgcactgatctatccccctcaa..........actgatttacttctgattgttacag
10OB07G21060.1.exon1010,131,56710,130,97620592
CGGAAAACTCCGAGCTAGACAAAAAGAGAGGATTGCTCAGCGCCATTTGATTAAGAACTA
TGCTGATGATAGACTCGAAGAGTTCATGAAACTATATGATTCGAGTGCAAATCCCTTGAG
AATTGTAGAAGATCCCAATCCTGTGCAGCCATCTGGGGCTAAACGTCTCAATGAATCAAC
TGCAGAAATGAAGCAATCCTCGAAGAAAACAAAGAGATATCCTGAAATTCCTCAAGAGCT
TTATGCCAAGCTTCCGGGCAATACTGCTTCATCGAAACACCACCCAAAAGCTGCAGATAT
CTCCAATCCAGGAACTCCACATCACCTCTTACCTGTTCTTGGCCTTTGTGCTCCAAATGC
TGATCAGATGAACTCATATAAAGGTTCAGTTTGTGGGCCAAGCACAAAGGAACAAAAGAA
AGCTAGTAGTGAACTAGCCAATAAATCGCTATTGACTCCTGCAGATCATTCTAGCGAACA
GAAAAATGATGTCCAACCAACTTCTTGTAAGCCTATGTTTCCTGGTTCCTCCGAGGAGAC
TTTGCGAAGGCTTAATAACATCATTCCAGATAGTTACTTCCCCTTCCAACCT        
 Intron 10-1110,130,97510,130,694282
gtatgtcctcttctttcgctggtag..........aaataacaaggttttttatttgcag
11OB07G21060.1.exon1110,130,69310,128,567002,127
ATTCCTCCTATTCCTGGGAAGGGGATTGGTGATCCCGTAGAAAATCCTGTATCGTCCTTT
CCTTCATTTCAAGGGAAACTGGGTCTTCCTAATTTTAATCTGGAAGACAGCATTCCACTT
AAGCATATGAAGTCAGTACCAGATCTTTTCCCCAACTTGTCATTGGGCACTAGCAATGAA
TATCTACGTAATTGTGTCCCAGAACTGCCAAATAGTTCATTGCTACCAAGCTTTATGGCA
GATATTGCTGGAACTTCAAAACAGAAGAACAAGTTCATGGCAGATATGTCTGGCCTTCTT
CCAGGTTTGGCTATGAACCCTGTTCAACAAATCCATTCATCCATGCCTGAAAATCATAAG
AAGGTCTTGGACAAATTAATGATGCGTGCTCAATATTCCTCAAGCAAGGTCTTGAAGAAT
GCCTCAAATAAGTTCCTAAAAAAGAGTCCAAAACCTGACTACTGGTCAGAAGATGAACTT
GATGCATTGTGGATTGGGGTTCGTAGGCATGGAAGGGGTAACTGGGAGGCCATGCTTAGA
GATCCAAAGCTCAAGTTTTTGAGCCACCGATCTCATGAAGAGCTAGCCTCGAGATGGATT
TTGGAGGAGCAGAAAATTATAGAGGAACCAATGTCTACAGCCACCAGAAACTCCAACTCT
ACATCATTTCCTGGAATATCGGACGCAATGATGTCTCGGGCACTTAATGGAAGTAACTTC
TCCAAACTGAGGATGGAGCCGCCAAAGTTGCAGTCCCACCTAACTGATATTCAGTTAGGT
TGCAATGATATACCAACTAGATTTTCTCATGTTGAGCCCACTAATTACATGAATTTAAGT
GAGGGTGGTCCCTCACTGACACCGTGGCAGGATTTCAAAAACAGATCAGGATACAGTGGA
GATTTTCCTGGCACACTTGACAAGTGGGAGAAACCTGATATTGGACTGATCCCACCATTT
ATGCCAAATCCTTTTATGAAGGAAAGCATTGGCTCACTGCCCATAAACAGACACAACAGT
AGTTCCATTCAGCAGAATGAAGTTGGACTGAGTTCCCATGAGAGCATTCTTCATGGTTTT
TCAGATGGACAAGCCAAATTATTCCATGAGATGCAACGGCGTGTCAAATTAGGGAAATTG
CCGATTGAGATGAATCTGAATCACACAAGGCTTTCAGATCCTCTAATTGAGAACTCTGGT
GATTTTGGAAGTTCAAAACCAAACAAGCTACCACATTGGCTTCAGGAGGCTGTGCGTGCA
CCTCCATCTAAGCCACCTGAATGTGAACTACCAGCAACTGTTTCAGCAATTGCTCAATCT
GTGTGCCTACTACTTGGAGAGCAAAAACCAGCAATACCTCCATTCCTGATTCCAGGACCT
CGTCTTTCTCTCCCCAAGGACCCAAGGAGTGCTCTAAAGAAGAGGAGAGTTCACAAAGTT
CAGCAAACTTCTTCCCACGCGGAGCATCCCAAAATCACAGTTGGGCAAGGTGACCAGAGC
TCTACTCCATCAGCACTGCTATCCAAGGAAGCTGCACGTGCCTCTCCTGCAGTTTTTAAA
AGCATTGATGGTTCCTCACTCAACTTGAACTCCCCTTCTTCATCGTCAGCTGGCAGTCAG
GGGCAGGATGTTTCAACTCCCACTCTTGAAGTACCCCACAAAACCATGGAAGGTCAAGAA
CCTGCTGCCGCCGCTGGCACTTGCCCATCCACGCCAGAGGCTCCTGAGACAGGTACTCAG
AGCGAATTGTCTGGATCGTGTAGATCGCCCGTGAGGGATACTCCTGATCCTGACAATCTG
AAGAGCAAATTGTCTGGATCAGTCAATTCACCTACGGGAATGTCAGGGTCGCCAGTGGTT
GATGCACCTGGGGCAAGCAGCAAGCCAGCTGCAGTGACCCTATCAAGTGACGACGAGTCG
ACCCAAGAGGGTGTATCATACAAAGCCGTAACCGTCAGCGACCAGGAGAAATCGACTCCC
CCTGACGATAGCAAAAATTCAGGTGCGGCAGATTCAGTTTCGACTCCCCCTGACGATATC
AAAAATTCAGGTGCGGCAGATTCAGTTTCGGCAGCTCAGACAGCTGACGAAGATAAGGTG
GACGAGATGCTCACAAATGAGCATTAA                                 
3' downstream sequence
gacatttgagcaaatgagctcaatgcttatttttcttccatttagcgctg..........