Oryza brachyantha (Oryza_brachyantha.v1.4b)
Description

Similar to RAD23, isoform I [Source: Projected from Oryza sativa (Os06g0264300)]

Location
About this transcript

This transcript has 14 exons and is annotated with 37 domains and features.

Gene

This transcript is a product of gene OB06G19220 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OB06G19220.11856409aa
 
Protein coding
J3MD28 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........ttggtataaactttacttcacccgtgtgtgcgcttctcgtcgtcgtcgtc
1OB06G19220.1.exon16,469,7716,469,653--119
CTCCTCGCGAGCGAACCGGAAGTCCAAGGGGAAGGAAGGCGGAGAGGAGAAACCCTCGAA
GCGAAGAGTAGGGGTAGGGATATCGCGAGAGTGAGAGAGAGAGGAGGCTAGGAGGCGAG 
 Intron 1-26,469,6526,469,6530

      
2OB06G19220.1.exon26,469,6526,469,5870066
ATGAAGCTGTTCGTGAAGACCCTCAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAG
GCGTCG                                                      
 Intron 2-36,469,5866,469,128459
gtacgatccccccatccctctccca..........gcttacagttgaatctgttttgcag
3OB06G19220.1.exon36,469,1276,468,96600162
GTGGCTGAGGTGAAGAAAATCATTGAGACTACTCAGGGGCAGAATGTGTACCCTGCCGAT
CAACAGATGCTCATACACCAAGGAAAAATTCTCAAGGATGACACAACTTTGGAAGGCAAC
AAAGTTGCAGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                  
 Intron 3-46,468,9656,468,233733
gtattttgacgatctcatttactgg..........tttttggatatacataaaatttcag
4OB06G19220.1.exon46,468,2326,468,1790054
GCCAAGGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG      
 Intron 4-56,468,1786,467,644535
gtaatttttttggcatatataattg..........atgctgaactgtttatctgcgctag
5OB06G19220.1.exon56,467,6436,467,5610283
GCTCAACCTGCTACTCCAGTGGTCCCTGTTACCCCAGTTGCAAGAACTCCACCTCCACAA
GCACCTGCTGCTGCACCTGAACC                                     
 Intron 5-66,467,5606,467,48873
gtgagttatatccattctctaattc..........ttatttattataatgtcgttcatag
6OB06G19220.1.exon66,467,4876,467,4252263
GACACCTCCAAGTACGCAGCCTGCAGTTGCTTCTCCCGCCCCAGCTACTGCTGTGACTGC
ATC                                                         
 Intron 6-76,467,4246,466,3291,096
gtaagctccctgttggaacccttat..........tcctttttgccattatgatgtgcag
7OB06G19220.1.exon76,466,3286,466,15120178
AAGTGATGCTGATGTCTACAGTCAGGCGGCATCAAATCTTGTTTCAGGTAGCAACCTAGA
AGAGACAATCCAACAAATTCTTGACATGGGTGGTGGCACCTGGGAACGTGACATGGTTGT
CCGTGCTTTACGTGCTGCATATAACAACCCTGAGAGAGCCATTGACTATCTGTATTCT  
 Intron 7-86,466,1506,465,973178
gtaagttccatatttggtacttttt..........tgcattctggcttattatctgctag
8OB06G19220.1.exon86,465,9726,465,78400189
GGAATTCCTGAGAATGTAGAGCCCCCACCTGTGGCTCGCGCGCCTGCTGCTGGTCAACAG
GCAAATCCGCAGGTTCCTTCTCAGGCTCAGGCTCCAGCTCAGGCTCAGGCTCTGGCTGTA
CCTCCACCTGTGCAGCCATCTGGTGGTACTACAGGACCTAATGCAAATCCTCTAAACCTT
TTCCCCCAG                                                   
 Intron 8-96,465,7836,465,046738
gtatggtgtgtaaatgtcaatccta..........ctttttcatatgttttcatgtatag
9OB06G19220.1.exon96,465,0456,464,9740072
GGTGTTCCAAGTGCTGGTGCAAATCCTGGTGCTGGCGCTGGTGCCCTTGATGCATTGCGA
CAACTTCCACAG                                                
 Intron 9-106,464,9736,464,88985
gtactattgtactgttggtgtaact..........cagctttatacttgtttcttgtcag
10OB06G19220.1.exon106,464,8886,464,8410048
TTCCAAGCGCTGCTTGCATTGGTCCAGGCCAATCCCCAAATCTTGCAG            
 Intron 10-116,464,8406,464,740101
gtgctgatataaatactcataacgt..........tgggtgtgattctgtttacttgcag
11OB06G19220.1.exon116,464,7396,464,62702113
CCAATGCTTCAAGAGCTTGGGAAGCAGAATCCACAAATCTTGCGGTTGATTCAGGAAAAT
CAGGCCGAATTTCTCCGCTTGGTGAATGAATCACCGGACAGTGGTACTGGGGG       
 Intron 11-126,464,6266,464,499128
gtaagaaccaagaaaggctacgttt..........ttttttatgtactctggtcaaccag
12OB06G19220.1.exon126,464,4986,464,4202079
AAACATACTAGGTCAGCTAGCAGCTGCAATGCCACAGGCGCTTACAGTTACACCAGAGGA
ACGGGAGGCCATCCAGCGG                                         
 Intron 12-136,464,4196,464,057363
gtatgtttgcctttttttaatgcta..........agtcttactaaaactttcttgacag
13OB06G19220.1.exon136,464,0566,463,93400123
CTGGAGGCAATGGGGTTCAACCGTGAGCTCGTTTTGGAGGTCTTCTTTGCATGCAACAAG
GATGAGGAGCTGGCTGCCAACTATCTTTTGGATCATGGCCATGAGTTTGAGGATCAAGAA
TAG                                                         
 Intron 13-146,463,9336,463,9340

      
14OB06G19220.1.exon146,463,9336,463,427--507
GTGGGTATTAGCTTTGTCTCAATCGTGGCGGGGAGAAAAAAAAATCGAGGCTGAAGCAGT
GCAGCTCAGTACCCTTTCTTATTTCTGACAGCTGAGAAATACCTGGTCGTGTGTGCAATG
CCTCTGACTATGTTTTAATTTTCAGTGTCTTGGGAATGGTTTTGAAGTACATATTAATTT
CATATTCACATATTATACTGTATAAAATGTGCATCTTCGCCTCGTGAGAACATTCCTTTG
AACCAGGAAGAACGAGCCGCTGGTTTTACCATATATCAGTCTGTTTTCGTCATATCACTG
CGTTAGAAACTTCGTCTGTTACCGTGAGCACATTCCTTGATTTTGGTTCCGCTTCTTGCT
CTAAGCACAAGTAAGAGTAAGGGCCTGTTTGGGACTATTCTGCTGCCAAAAGAATCAGCC
AAACAGGTCTAACTTTAGAAACTCTGCTAAAAAAAAAAAAGAAAAGTTAGAGCCAAGGCC
AACTCCATGTTTTTTTCTGAAGCCTGG                                 
3' downstream sequence
ggtacttcacgaaatgaaagttttatatcttctcgtggagttgtcattac..........