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Oryza brachyantha (Oryza_brachyantha.v1.4b)
Location
About this transcript

This transcript has 10 exons and is annotated with 28 domains and features.

Gene

This transcript is a product of gene OB06G12400 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OB06G12400.12789804aa
 
Protein coding
J3MB46 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........acagtgattagtcaggaggaggaaacaagaatcgacggccgtaggggggg
1OB06G12400.1.exon11,451,9741,451,77001205
ATGGAGATCCAGGAGGCCGCGGGCGCCGGGGAGGATGGGTTGGAAATGGAGGCTCCGAGC
GTGAGCACAGTGGCGATTGCGGTGAACGGGAGCAAGAGCAGCAGGCACGCCCTCAAGTGG
GCGCTCGACAAGTTCGTGCCCGAGGGGAGGGTCCTCTTCCGGATCTTGCATGTCCGCCCG
ATCATCAAGATGGTGCCCACTCCAA                                   
 Intron 1-21,451,7691,450,951819
gtgagaattttttttccctccatac..........ttttttctcccgtctcctttgtaag
2OB06G12400.1.exon21,450,9501,450,82910122
TGGGAAATTTCATTCCAATCACACAAGTGCGAGAAGACGTAGCAACTGCATACAGGAAAG
ATGTGGAATGGCAAGCGAACAATATGCTACTTCCTTACAAGAAGATGTGTGCTCAGAGAA
AG                                                          
 Intron 2-31,450,8281,450,74386
gtgccctacataatcctctaagtgt..........catctttactctatctgatgtacag
3OB06G12400.1.exon31,450,7421,450,62402119
GTAGAGGCTGAAGCTGTTCTACTCGAATCTGATGATGTTCCTACAGCTTTAAGCGAAGAA
ATCAACAAATTCAACGTCTCTAAGTTAGTTTTAGGTTCTTCTAGCAGCATATTCCGAAG 
 Intron 3-41,450,6231,449,785839
gtaaatcctagtccctgatatttca..........ctaacactttttattattctttcag
4OB06G12400.1.exon41,449,7841,449,58821197
GAAACACAAAGGAAGTAAGACTGCATCGAGAATCTGTGAGTGCATTCCAAGCTTCTGCAC
AGCATACGTTGTCTCAAAAGGAAAACTATCATCTGTTCACTCAGCTACATCTGATAATGT
TGAAGCACCTGAATCCATATCTTCTTCAACTGTTTCATCCCCTAGCTCTAGAAGCCTTGC
ATCCAGTGTACCCTCAG                                           
 Intron 4-51,449,5871,449,296292
gtaacagaaaatctgcatgttttgt..........atattgaatatgctgtattctgcag
5OB06G12400.1.exon51,449,2951,448,97610320
AATGGGGAGACACGTATGGGTCAGCAAATGTGACATTCCACCAGTCATCTCTGTCATCTC
AGCGTGACCAAGCACTGGCAAACATGAACAAATTATATAACAGGACAGGTAGCCCTTCAG
GCAGTGGTAGGACTGAAATCTCCTACCATGATGATACAGTCCTGACAAGTTCGCACTCGG
TGAATTCAGAAGCACAGTTCAGTAGTAGCAGCAGTGGGAAGTCTATCTATAAGAGCTTCA
ATAGAGATCATTCATTTGATAACTCTGACCAGGCATCTGTTTCGGACATCGCAACAAATC
TGAAACATTCTCATGACCAG                                        
 Intron 5-61,448,9751,448,89185
gtatcgaatccattcaagaaaatat..........agatgtgtcttcttctgttaagcag
6OB06G12400.1.exon61,448,8901,448,78900102
GAGTATCTAAAGCTTGAGATTGACAGGCTGAGGGTTAAACTACGGCATCTTCAGAAGCTT
AATGAGATAGCTCAGAATGAATCATTTGATGCCAGTCAGAAA                  
 Intron 6-71,448,7881,448,684105
gtaagttttaatttttaatgttagg..........tttcctgttgaatctttgctattag
7OB06G12400.1.exon71,448,6831,448,26700417
TTACATAAGTTGGGCATCCAGGACATTGAGGATGAAATTAAGCTTAAAGAGAGTGAACTG
ACAGAAGAAAAGGTAAGGAGATTGATAAGGAAAAAAGAGAGAGAACAACAGGAAGTTGCC
AGAAGAGAGGATCAATTCAAAAGTGATAGTGCTGAAAGGGAAGCAAAACAGAATAATGAT
ATTCAGGAAGGTGATGAGAATAAGACAGAAGAGAGGATTTTTGGGCGGTGTTTTGATGAG
TATAATAGGTATACCTGGGAGGAGATACAAGCATCGACTTCATCATTCTCTGTTGATCTT
ATGATTGGCAAGGGATCATATGGCACAGTCTACAAGGCTAAGTTTCATCATACAGTTGCA
GCAGTAAAAGTTTTGAACTCCCCGGAAGGCTGTGGAACTCAGCAATTACAACAGGAG   
 Intron 7-81,448,2661,448,143124
gtactaccactttctccccaacact..........gtgcaactcatcttttttttttcag
8OB06G12400.1.exon81,448,1421,447,39000753
CTTGAGGTCCTAGGTAAAATCCGGCACCCTCACTTGCTCCTGATGCTAGGTGCATGCCCT
GAACATGGTTGCTTGGTCTATGAATACATGGAAAATGGTAGTTTGGATGACATGCTACAA
CGGAGAAATAATACGCCGTCCTTGACCTGGTTCGACCGTTTAAGAATTGCTTGGGAGGTT
GCCACTGCTCTTATGTTCCTTCACAGTTCCAAACCAGAGCCTATCATACACCGGGATCTG
AAGCCTGCAAACATACTACTTGACAGGAACTTGGTTAGCAAGATAGGTGATGTAGGCTTA
TCAACTTTGCTTCCTAGTATGGATCAATACCTGTCCACAATGATCAAGAACACTGCCCCA
GTGGGCACTTTCTGTTACATAGATCCAGAGTACCAGAGAACTGGTGTGGTCTCCATGAAG
TCCGATGTGTACGCGCTAGGGATAGTGATATTGCAATTGCTGACAGCGAAGTCACCAATG
GGAATTGCTCATGTTGTGGAGACTGCACTAGAAGAGGGACACTTTTTGGACATTCTGGAT
GCATCTGCTGGGCAGTGGCCTCAGAAAGAGGCACAGGAATTGGCTGTCCTAGCCCTCAAG
TGTGCTGAAATGAGGCGCAGAGACCGTCCCGACTTGAGTGATCATGTTCTTCCGGCACTG
GAGAGACTGAAGGATGTTGCAGCCAAGGCCAGAGAAATGGCTCTTCATGGCCAGACACCA
CCTCCAAGTCACTTCATTTGCCCCATACTTCAG                           
 Intron 8-91,447,3891,447,276114
gtgtggaatcctcacttgtcatagt..........tgatgtgttcttactgatgtttcag
9OB06G12400.1.exon91,447,2751,447,09600180
GAAGTGATGGTTGATCCATACGTTGCATCAGATGGTTACACATATGACCGTAAGGCAATC
GAGCTGTGGCTTAGTATGAATGACAAGTCCCCTATGACAAATCTGCGATTGCCCCACAAG
AACCTGATACCCAATCACTCCCTTCGTTCTGCAATCATGGACTGGAGATCAAAGGGCTAG
 Intron 9-101,447,0951,447,0960

      
10OB06G12400.1.exon101,447,0951,446,722--374
CAGCTGATGCACATTCTGGGTTGCATCCTCCACAATGTTGGCAATCTTGCAGTTGATGAA
TTCTTTTCTTTTCAAAATGTAAAGTTTTGGCAGATCTAGTGTAGAAGTAGTATTCATGTT
TGCTCAAAAAAGAAAAAAAAAGATAAGTGGTGTTCATAAAGAGGTTCAAGTTGTGCAGCT
TTATCAAAATATAGAAATTATTTCCTAGCTCATAGGCAGGCATTCCACTTCACTGTCCTA
GTGAAGGTAACAATTATTTTTTTCCCCTTTGCCATTTGTAATAATGTGTTGTAAGCTTGT
AATTAGTGATCTCTCAACATTTGACCTGAATGTAGGACAACTTAATGAAAAACTAATATG
AAGCTTGCAGAGAG                                              
3' downstream sequence
ttgttctatgctgtcagtttgtcattgttgtatactgttgggctgtctat..........