Oryza brachyantha (Oryza_brachyantha.v1.4b)
Location
About this transcript

This transcript has 14 exons and is annotated with 21 domains and features.

Gene

This transcript is a product of gene OB05G21690 Show transcript tableHide transcript table

Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OB05G21690.11944537aa
 
Protein coding
J3M6E5 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
Markup
  • loading
Show/hide columns
  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........ggaaaacaagaagccggccggccggagagagagagagagagagacccgca
1OB05G21690.1.exon110,605,27610,605,43400159
ATGGAGAGGAGGCGCCGTCCGCTGCTCCTCTTCCTCTCGCCATGGCCGCCGCCGCCGCTG
CTGCTGCTGCTGCTTGCTCATGGCGTGAGGCCGCTGCAGTTCACGCGGAAGGACTTCCCC
GACGGCTTCGCGTTTGGAACTGCGACTGCGGCTTATCAG                     
 Intron 1-210,605,43510,605,585151
gtaggtaggtatacacacagtatac..........gtttggtttttggttgatgttgcag
2OB05G21690.1.exon210,605,58610,605,6490164
TATGAGGGTGCAGCTGCAGAGGATGGGAGGAGCACTAGCATCTGGGACACTTACACTCAT
TCAG                                                        
 Intron 2-310,605,65010,606,569920
gtctctctctctctctctaactcct..........tctgactcctgctctgctgcatcag
3OB05G21690.1.exon310,606,57010,606,6281059
GGACGCATCCAGAAGACGGAACAGGTGATGTGGCATGTGATGGCTACCATAAGTACAAG 
 Intron 3-410,606,62910,606,72597
gtacgcttttgccaattagagataa..........gaaattctgtgtcggttctatgcag
4OB05G21690.1.exon410,606,72610,606,8010176
GAAGATGTCAAGCTAATGAGTGAGACAGGCCTGGAAGCTTATAGACTCACCATTTCTTGG
TCAAGACTTATTCCTA                                            
 Intron 4-510,606,80210,606,929128
gtagggaactacatatcaggcttcc..........ctgattttaactttgcacaaactag
5OB05G21690.1.exon510,606,93010,607,0011172
ATGGGAGAGGAGCGGTTAATCCAAAAGGGTTGCAGTTTTACAACAATGTGATAAATGAGC
TAGTGAAAGCAG                                                
 Intron 5-610,607,00210,607,233232
gtaatcgcaccttgattctcctctc..........tctcttgtcctaaattcttgaatag
6OB05G21690.1.exon610,607,23410,607,3211288
GTATTCAGATACAGGTTGCCCTGTACCATCTGGACCTTCCACAGAGCCTTCAAGATGAGT
ATGGAGGATGGATTAGCCCCAAAGTCGT                                
 Intron 6-710,607,32210,607,41493
gtaagaactaagcagtaattctcat..........cattcataattcatttatgttgcag
7OB05G21690.1.exon710,607,41510,607,67320259
TGATGACTTCACAGCATATGCCGATGTTTGCTTCCGTGAGTTTGGTGACAGGGTTGCACA
TTGGACAACTGTGCTTGAGCCAAATATCATGGCTCAAAGCTGCTATGACATAGGGATTCT
TCCTCCTAACCGCTGCTCATATCCATATGGCAGCAGCAATTGCACAGGTGGAAATTCCAC
AGTTGAGCCATACTTGTTTATGCACCATTCCCTGCTAGCTCATGCTTCAGCTGTCAGACT
TTACAGGGAGAAGTACCAG                                         
 Intron 7-810,607,67410,607,812139
gtgagtgtgcatcatcacttgatat..........tatgtcttatgtttcactgtctcag
8OB05G21690.1.exon810,607,81310,607,92802116
GCTGCACAGAAGGGCATTATTGGCATAAATATGTACTCCATGTGGCTCTATCCCCTCACA
TATTCTGTTGAAGATGTAGGCGCTACTGAAAGAGCAAAGCAGTTCATTTATGGCTG    
 Intron 8-910,607,92910,608,684756
gtatttctcagtgtgttactatatg..........tacaaaacataatcaaaatttgcag
9OB05G21690.1.exon910,608,68510,608,90521221
GATCTTGCATCCTTTGGTGTTCGGAGATTACCCAGATACAATCAAGAAGGCCGCTGGTTC
CCGCCTTCCGTTCTTCTCTAACAATGAATCTGAGCTGGTTACGAACGCATTCGACTTCAT
TGGGTTGAATCATTATACCTCAGTTTACTCCAACAATAACGACAACACAATAAAAACACC
GTTACAGGACTTGACTGCCGACATTTCTGCTCTGTTCAGAG                   
 Intron 9-1010,608,90610,609,00499
gttgaaaataattcttatggatatg..........ttctgcatgtttttttctctgacag
10OB05G21690.1.exon1010,609,00510,609,0331029
TCACCAAGAATGACACACCTACTTCAGTG                               
 Intron 10-1110,609,03410,609,10572
gtatatttttaaactattgaatctt..........aatatggtttttgctcttgaaacag
11OB05G21690.1.exon1110,609,10610,609,20501100
TTTGAACCAGGAAGCACAGAAGATCCTCAGGGGCTAGAGAATGCACTTGAATATATTCGA
GAAAACTATGGAAATTTGCCAATTTATATCCAGGAAAATG                    
 Intron 11-1210,609,20610,609,330125
gtaggcagtccttcaataatctgca..........aatcaatcacctggcattgcatcag
12OB05G21690.1.exon1210,609,33110,609,4181288
GGAAGGGAGCATTAGATGGAACCCTGGATGATGTGGAGAGGATTAGCTACTTGGAACAAC
ACATAGCAGCCACACTGAGAGCCATCAG                                
 Intron 12-1310,609,41910,609,597179
gtgcttcagaattatatgttccact..........gatcgatcgatcggatcgcgtgcag
13OB05G21690.1.exon1310,609,59810,609,88020283
GAACGGCGTGAATGTGAAGGGATACTCCGTGTGGTCATTCATGGATCTGTACGAGTTATT
TGGCGGCTACAACGAGCTGCATTATGGCCTCGTCGCCGTCGATTTCGGCAGCGAAGAACG
GAGAAGGCAGCCGAGACGCTCTGCCAGATGGTACCTGGACTTCCTCAAGAACAATGCTGT
CATCAGGGTGGACGATGGCCTTGCTGTCTCTGCAGGTTCTCATGCTCAACTTTTAGTGCT
GCCAATACCCAAACCATCCTATTCTGCTAGTGGCAGATTCTAA                 
 Intron 13-1410,609,88110,609,8800

      
14OB05G21690.1.exon1410,609,88110,610,210--330
GATACAAAGGGTGAGGGCTGGTTTCCCCTTTTCGCTCCCCCCTATTTTTTAAGGGGATTC
AGCATGTAGCGGGTTGGAGATCCCCTAGCCCTCATGTTGGATCCACCCCTTGCTCCTGGA
TGAACAATCCTGATATGGTGATGTGTCTTCCGGTGTTCAGAGTTGGAAATTGTAAAAGTG
TACTATACCTGCAAAGTGCAAACTACTCAGAGTTCATACTGCAATATTGTTTTCGGTGTA
GAGTGGTGTCCACAAAGTTTCATTGATAATTAATAACAAATAAAAACAGGGATGATTGTT
GGTTGGCTACTCGCTGTGATAAATTTCAAC                              
3' downstream sequence
catatgtttcaataccatgttttctctttcaggttgcattctaaatagtt..........