Oryza brachyantha (Oryza_brachyantha.v1.4b)
Location
About this transcript

This transcript has 6 exons and is annotated with 22 domains and features.

Gene

This transcript is a product of gene OB02G33760 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OB02G33760.12599599aa
 
Protein coding
J3LFF9 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........tccccttccgccccttcgcagaaattcaaactcaaagcctgcgctcctcc
1OB02G33760.1.exon119,301,49319,301,520--28
GGCGCCGATCTGCTCCAAGGAGGCCACC                                
 Intron 1-219,301,52119,301,54020
gcaccacccggagcaagccg                                        
2OB02G33760.1.exon219,301,54119,301,6290289
ATGGCCTCCACCAAGGAAGCCTACCGCGTCGAGCTCCGAGCTGCCGTCCGCCAGCTCGGC
GACCGCGGCCTCTACTCCGCCGCCAAATG                               
 Intron 2-319,301,63019,301,70879
gtacgcgccccccctaaaacccacc..........cgccgcctcctccccctccttgcag
3OB02G33760.1.exon319,301,70919,302,07820370
GGCGGCCGAGCTGCTGGTCGGCATCGAGCCGGACGCCACACCGTCACCGTCGGTGGTGAT
GGACACCCCATCCTCGTTGGGCTCTGCCGCATCCGGCGGGCGCCTTCTGCCCCTTCGCCG
CAGCGGCGGGTCCAGCTTCCGCCGCCGCCTCCGGCCGGGCGGGGGCGCGGCCGACGCCGG
GACGCCGCTCGGCGGCGTCTCGTACGTAAGCACGCCCATCCCCGACGACGACGCGTTCGA
TGCGGGGGCTGACAAGTACCTGCTCGCCAAGACCTACTTCGACTGCCGTGAGTACCGGCG
CGCCGCTCACGTGCTGCGCGGCCAGACCGGCCGCAAGGCCGTTTTCCTTCGGTGCTATGC
CCTCTACATG                                                  
 Intron 3-419,302,07919,304,2282,150
gtgagtttggatggtattgcctttt..........tgatcatagttatcttctcttttag
4OB02G33760.1.exon419,304,22919,305,479001,251
GCTGGAGAGAAGCGGAAAGAGGAAGAAACAGTCGAGCTTGAAGGATCTCTGGGAAAAAGC
AATGTTGTTAATCAGGAACTAGTTGCATTGGAGAGAGAGCTCTCAACACATCGGAGGACT
GGTGCTATTGATTCATTTAGTTTGTACTTGTATGGCATTGTTCTACGTGATAAAGGCAGT
GAAGCTCTAGCTAGAACAGTTCTGGTGGAATCTGTCAACAACTACCCTTGGAACTGGAGC
GCTTGGTTAGAGTTACAATATCTCTGCACTAGTAGTGATATTTTGAATAACTTAAATCTC
AAGAATCACTGGATGAAAGATTTCTTCCTTGCTAGTGCACATTTGGAATTAAAGATGCAT
GAAGAAGCTTTGAAAAGATATGAACGTTTAATGGGGGTCTTCCGTTGCAGTGACTACATT
CAGGCCCAAATAGCAACCGTGCAGTATAGCATGAGAGACCTCGATGAAGCTGACATGATT
TTTGAAGAACTCCTTAGGACCGATCCTTTCCGTGTGGATTCTATGGACGTTTACTCAAAT
TTATTGTATGCAAAAGAAAGCTCAACCGCTTTAAGTTTCCTTGCTCACAGAGTATTTTTG
ACAGATAAATATCGCCCAGAATCATGCTGCATAATCGCAAATTACTACAGTTTGAAGGGG
CAGCATGAAAAATCAGTTTTGTACTTTCAGAGGGCACTTAAGCTTAATCGAAAGTATCTT
TCAGCTTGGACTCTTATGGGACATGAGTTTGTTGAGCTAAAAAATACACCTGCTGCGATT
GATGCATACAGGCGAGCTGTTGATATAAATCCCAGAGACTATCGTGCTTGGTATGGTCTT
GGTCAGATCTATGAGATGATGGGAATGCCATTTTATGCACTTTATTACTTCCGTAAGTCA
TCATACCTACAACCTAATGATGCTCGGCTTTGGAATGCTATGGCTCAGTGCTATGAAAGC
GATCAACTTCAAATGATTGAAGATGCCATCAAGTGCTACGAGAGGTCTGCAAATAATAAT
GATACTGAAGGAATAGCACTTCACCAGCTAGCAAAGTTACATGGTATGCTTGGACAATCA
GAGGAGGCTGCATTTTACTACAAGAAGGATTTAGAGAGAATGGAAGTTGAGGAAAGGCAG
GGTCAAAATTTTGTTGAAGCTCTGCTTTTCCTTGCAAAGCATTGCAAGAGCATAGGCAGG
TTTGAGGAAGCAGAGCACTATTGCACAAGGCTCCTGGATTACACCGGTCCA         
 Intron 4-519,305,48019,305,805326
gtaagttcaattacagaaaccatct..........caacttctatgctctatatttacag
5OB02G33760.1.exon519,305,80619,305,8950090
GAAAGGGAAACCGCAAAAAATATTTTGCAAGGGCTAAAAAGAGCACAATCAGCACTTCCA
CTGATGGATATCGACCATTTTGCAATGTAA                              
 Intron 5-619,305,89619,305,8950

      
6OB02G33760.1.exon619,305,89619,306,666--771
ACTTGACTCACAGATAAGTTATTTAGTTGGAAAACTAAGGTGGTAAGTGAAATGTGCATA
TTCTTATCTCCATTTTTATGCATTGAGGAAAGATACACATCCGTTTCAAGAGAACTGCTA
TAATACAGAATACTCATGGACAAAGGGTGTTGGTTATCACTCACTCCAAACCAGGCAAGG
AAAAGAAATCTATCAGGGCCACCCACCTGACGAAACTGGTACTCTTGAGTATCTCCAGTA
CCAGCAGAGCAGCCACTTCCAAGCTTCATAATGTGATCCTTATCGCTTGTATCCTTGCCA
GGAGGCTCCATATTGCTGGAGCTGTTGACCTTGTGTGCATCATGATCGCTTCCAGTTGCT
GAAGCTTGGTAATTAGTAACACTAGGCGCCGGCATGGGGCAAAAATGAGGGTCATTGGAA
TGATAAAGACCGCTAGCTCGACTATCGGCATTGCTGCTTTGCTTTCTGCTGTGTTTTGCT
CCTGCGGTTTTTTTCACTTGATTGCTTTGGTCTGTGTTGCCCTCCCATGGAGTTGCTTGC
ATATATAGGCATCTTGGAAGATTTGACCTGTCTGCATTCTAGATCTCATATTCTAGCTTG
TCATAATTGTCGATGTTTTTCTTTACTATAATTTCAGTTTTGTCAATTTATCATGTGTCT
CGGACCTATCATTTGCTTGTGGGCTGTGGCAAGGATCACTGTTGGTTGCCCCACTTGATG
TAACACCATTGGAATCGTGGGATTAATTATCTTGCTAGTACGCATAGCGAC         
3' downstream sequence
actatatttgtatgttccatatattaacatgtgtggtccttcagacgttt..........