Oryza brachyantha (Oryza_brachyantha.v1.4b)
Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:J3NCL4]

Location
About this transcript

This transcript has 5 exons and is annotated with 26 domains and features.

Gene

This transcript is a product of gene OB12G17220 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OB12G17220.13030807aa
 
Protein coding
J3NCL4 Ensembl Canonical

Domains

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  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
Superfamily11102-SSF57850-
SMART131171ArmadilloSM00185IPR000225 [Display all genes with this domain]
SMART173213ArmadilloSM00185IPR000225 [Display all genes with this domain]
SMART258298ArmadilloSM00185IPR000225 [Display all genes with this domain]
SMART299338ArmadilloSM00185IPR000225 [Display all genes with this domain]
SMART339384ArmadilloSM00185IPR000225 [Display all genes with this domain]
SMART582623ArmadilloSM00185IPR000225 [Display all genes with this domain]
SMART664705ArmadilloSM00185IPR000225 [Display all genes with this domain]
SMART709751ArmadilloSM00185IPR000225 [Display all genes with this domain]
Gene3D108307Armadillo-like helical1.25.10.10IPR011989 [Display all genes with this domain]
Gene3D308478Armadillo-like helical1.25.10.10IPR011989 [Display all genes with this domain]
Gene3D565796Armadillo-like helical1.25.10.10IPR011989 [Display all genes with this domain]
Superfamily104483Armadillo-type foldSSF48371IPR016024 [Display all genes with this domain]
Superfamily499793Armadillo-type foldSSF48371IPR016024 [Display all genes with this domain]
CDD2279PUB protein, U-box domain, plantcd16664IPR045210 [Display all genes with this domain]
PROSITE profiles2099U-box domainPS51698IPR003613 [Display all genes with this domain]
Pfam2397U-box domainPF04564IPR003613 [Display all genes with this domain]
SMART2492U-box domainSM00504IPR003613 [Display all genes with this domain]
PANTHER17801U-box domain-containing proteinPTHR45958IPR052608 [Display all genes with this domain]
Gene3D10107Zinc finger, RING/FYVE/PHD-type3.30.40.10IPR013083 [Display all genes with this domain]

Other features

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  • Feature type
  • Start
  • End
Feature typeStartEnd
Seg130135
Seg270279
Seg425441
Seg695704
Alphafold1807
Ncoils245268