Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OB07G21010.1

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Description

Regulator of nonsense transcripts 1 homolog [Source:Projected from Arabidopsis thaliana (AT5G47010) UniProtKB/Swiss-Prot;Acc:Q9FJR0]

Location

Chromosome 7: 10,092,042-10,102,562 forward strand.

About this transcript

This transcript has 31 exons and is annotated with 23 domains and features.

Gene

This transcript is a product of gene OB07G21010 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	OB07G21010.1	4193	1014aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3ML19	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	104	192	-	2.40.30.230	-
CDD	248	483	-	cd18039	-
Gene3D	334	386	-	6.10.140.1240	-
Pfam	350	451	DNA2/NAM7 helicase, helicase domain	PF13086	IPR041677 [Display all genes with this domain]
Pfam	460	656	DNA2/NAM7 helicase-like, C-terminal	PF13087	IPR041679 [Display all genes with this domain]
PANTHER	14	694	DNA2/NAM7-like helicase	PTHR10887	IPR045055 [Display all genes with this domain]
PROSITE profiles	257	389	Helicase superfamily 1/2, ATP-binding domain	PS51192	IPR014001 [Display all genes with this domain]
Pfam	248	318	Helicase/UvrB, N-terminal	PF04851	IPR006935 [Display all genes with this domain]
Gene3D	212	482	P-loop containing nucleoside triphosphate hydrolase	3.40.50.300	IPR027417 [Display all genes with this domain]
Superfamily	245	678	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
Gene3D	483	694	P-loop containing nucleoside triphosphate hydrolase	3.40.50.300	IPR027417 [Display all genes with this domain]
Pfam	103	192	RNA helicase UPF1, 1B domain	PF18141	IPR040812 [Display all genes with this domain]
CDD	104	191	RNA helicase UPF1, 1B domain	cd21407	IPR040812 [Display all genes with this domain]
Pfam	1	51	RNA helicase UPF1, Cys/His rich zinc-binding domain	PF09416	IPR018999 [Display all genes with this domain]
PROSITE profiles	1	51	RNA helicase UPF1, Cys/His rich zinc-binding domain	PS51997	IPR018999 [Display all genes with this domain]
CDD	484	673	Upf1-like, C-terminal helicase domain	cd18808	IPR047187 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	797	855
MobiDBLite	960	983
MobiDBLite	962	975
Seg	430	441
Seg	804	815
Seg	842	851
Alphafold	1	1014

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