Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OB06G19830.1

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Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:J3MD89]

Location

Chromosome 6: 6,929,671-6,935,355 reverse strand.

About this transcript

This transcript has 5 exons and is annotated with 18 domains and features.

Gene

This transcript is a product of gene OB06G19830 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	Flags
-	OB06G19830.1	4770	1589aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	199	293	-	SSF57850	-
SMART	364	404	Armadillo	SM00185	IPR000225 [Display all genes with this domain]
SMART	449	489	Armadillo	SM00185	IPR000225 [Display all genes with this domain]
SMART	490	529	Armadillo	SM00185	IPR000225 [Display all genes with this domain]
SMART	530	575	Armadillo	SM00185	IPR000225 [Display all genes with this domain]
SMART	774	816	Armadillo	SM00185	IPR000225 [Display all genes with this domain]
Gene3D	284	830	Armadillo-like helical	1.25.10.10	IPR011989 [Display all genes with this domain]
Superfamily	305	816	Armadillo-type fold	SSF48371	IPR016024 [Display all genes with this domain]
PROSITE profiles	212	291	U-box domain	PS51698	IPR003613 [Display all genes with this domain]
Pfam	215	289	U-box domain	PF04564	IPR003613 [Display all genes with this domain]
SMART	216	284	U-box domain	SM00504	IPR003613 [Display all genes with this domain]
PANTHER	13	832	U-box domain-containing protein	PTHR45958	IPR052608 [Display all genes with this domain]
Gene3D	210	283	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
Seg	316	327
Seg	370	381
Seg	397	410
Seg	829	1525
Ncoils	838	838

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